PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT09031
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 224aa    MW: 25754.1 Da    PI: 8.1503
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT09031genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61e-051234323
              ET..TTTEEESSHHHHHHHHHHT CS
   zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
              C+   C+k F+ +s+Lk+H  +H
  EMT09031 12 CQeeGCKKAFKYPSQLKKHEESH 34
              77779**************9988 PP

2zf-C2H215.64.7e-05101125223
               EET..TTTEEESSHHHHHHHHHH.T CS
   zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
               kC+   C  sFs+ksnL+ H++  H
  EMT09031 101 KCSfdGCECSFSNKSNLNMHMKAcH 125
               799999****************955 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.2451035IPR007087Zinc finger, C2H2
SMARTSM003550.0391034IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801234IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-61234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035554267IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804467IPR007087Zinc finger, C2H2
SMARTSM00355187091IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.3E-685122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.53E-985142No hitNo description
PROSITE profilePS5015710.99100130IPR007087Zinc finger, C2H2
SMARTSM003550.0027100125IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280102125IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-4124153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.2131157IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.642131157IPR007087Zinc finger, C2H2
PROSITE patternPS000280133157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDDTKSNQQV ICQEEGCKKA FKYPSQLKKH EESHAKLDYV EVVCCEPGCL KTFTNAKCLR  60
AHNQSCHLYT QCDICGEKHL RKNIKRHLRA HHKVHSTERL KCSFDGCECS FSNKSNLNMH  120
MKACHDQVRP FECRVAGCGK TFPYKHVRDN HEKSSCHVYV EGDYEEMDEQ LRSRPRGGRK  180
RAAVTVETLT RKRVTIPSEA SSLEDGAEYM RWMLSDGDGS NHAE
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3745270.0AK374527.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3068C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181263.11e-166transcription factor IIIA-like
SwissprotQ84MZ41e-75TF3A_ARATH; Transcription factor IIIA
TrEMBLM8B4V81e-167M8B4V8_AEGTA; Transcription factor IIIA
STRINGEMT090311e-168(Aegilops tauschii)
STRINGTraes_6DS_2B2F9C290.21e-160(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.17e-79transcription factor IIIA