PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT08990
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family AP2
Protein Properties Length: 705aa    MW: 73840.3 Da    PI: 6.8916
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT08990genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.84.1e-11267323155
       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
               s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  EMT08990 267 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 323
               57*******************4444.2455535555.779999**************98 PP

2AP246.78.1e-15366417155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  EMT08990 366 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 417
               57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-14267333IPR016177DNA-binding domain
PfamPF008471.3E-8267323IPR001471AP2/ERF domain
CDDcd000182.26E-17267333No hitNo description
PROSITE profilePS5103217.28268331IPR001471AP2/ERF domain
SMARTSM003801.4E-21268337IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-11268332IPR001471AP2/ERF domain
PRINTSPR003674.7E-6269280IPR001471AP2/ERF domain
CDDcd000186.42E-23366425No hitNo description
PfamPF008471.0E-9366417IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-17366426IPR016177DNA-binding domain
PROSITE profilePS5103219.045367425IPR001471AP2/ERF domain
SMARTSM003802.4E-33367431IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-18367425IPR001471AP2/ERF domain
PRINTSPR003674.7E-6407427IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MATVNNWLGF SLSPQELPPS AAASGDVSGA DVCYNIPQDW NMRGSELSAL VAEPKLEDFL  60
GGISYSDHHH HQHKQPGGNN MVVPAGSASG GAACYASSGG SSVGYLYHPS SASLQFDDSG  120
MFADSVMVAS SGGGVHHDGA GIMANTTANG DLNNGGGGGG IGLSMIKSWL RSQPSPAQPP  180
EQQRADAAAQ GLSLSMNMAA CMPPLACGER GVPELAIVRK DDTAGGSGAG SGAVVSAGAD  240
STGGSSGAVV ETPASRKTAD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQTRKGR  300
QGGYDKEEKA ARAYDLAALK YWGATTTTNF PVNNYEKELE EMKHMTRQEF VASLRRKSSG  360
FSRGASIYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLNA  420
VTNFDMTRYD VKSILDSTAL PIGSAAKRLK DAEAATASSL ALQQQQHAGV VSGYDMGALA  480
AYGAAYHHHH PSVAGAVAWP TIAFQAPPQQ VSGGGGGHMY HPYAHAQPLR GWCKQEPDHA  540
VIAAAHSLQE LHHLNLGAGG GAHDFFSQHA QAMQQQHGGL GSIDNGAGAS LEHSTGSNSV  600
VYNNGAVESY MLPMSTTSTA AVSHAHEQAA AHAHARAVAA QAYSGGNMSR DHDDGKIAYE  660
NYLVSTAEAY GGGRMAAWAP ASAPPATSSS DMTGTQLFSV WNDTN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00368DAPTransfer from AT3G20840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151353.10.0AP2-like ethylene-responsive transcription factor BBM2
TrEMBLM8B5V20.0M8B5V2_AEGTA; AP2-like ethylene-responsive transcription factor BBM1
STRINGEMT089900.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-117AP2 family protein