PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT08963
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family CO-like
Protein Properties Length: 396aa    MW: 43609.4 Da    PI: 4.6906
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT08963genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.54.1e-06445540
  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
               C+ ++e++   +C+++   lC +C  + H+       Ht++
  EMT08963  4 LCDYCGEHRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
              6******99*********************657888889876 PP

2zf-B_box25.92.1e-084789541
  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
               C+++ ++++   C + ++ lC++C  ++H+       H++++
  EMT08963 47 LCDRCASQPAMVRCLEENTSLCQNCDWNGHSAgssaagHKRQN 89
              7*****************************6688899998876 PP

3CCT62.61.2e-21340383144
       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
               R+ a++RYkeK+k+RkF+ kirYesRKa+A+ R+RvKGrFvk+ 
  EMT08963 340 RDSAITRYKEKKKRRKFDHKIRYESRKARADVRKRVKGRFVKAG 383
               899**************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.8E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.869147IPR000315B-box-type zinc finger
CDDcd000214.50E-8447No hitNo description
PROSITE profilePS501199.2864390IPR000315B-box-type zinc finger
PfamPF006431.0E-54790IPR000315B-box-type zinc finger
CDDcd000213.02E-54788No hitNo description
SMARTSM003360.0914890IPR000315B-box-type zinc finger
PfamPF062039.0E-17340382IPR010402CCT domain
PROSITE profilePS5101714.971340382IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGALCDYCGE HRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC  60
LEENTSLCQN CDWNGHSAGS SAAGHKRQNI NCYSGCPSSA ELSRMWSFIL DIPNVAPELN  120
CEQVISMMSI SDSAVSNGDN AQGDNSLVDM ACATLDEEDK QKSVIGSSSE AALNLLPPAN  180
NQTAVSVDST TAKYTPDKHM FSKDSIYEDF SMDDIDLSYE NYEELFGNSH IQTEELFDDA  240
GIDSYFEPKE ATAVNSDEQP KPKQPAASNA LSADSGMSNP AVKEDDSSLC IPVRQAISYS  300
GFTGESIPEE YQDCGVSPML LMGEPPWLPP GPDGSFAGIR DSAITRYKEK KKRRKFDHKI  360
RYESRKARAD VRKRVKGRFV KAGEAYDYDP LDTRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349353KKKRR
2349354KKKRRK
3350354KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2531300.0AK253130.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf114k16, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563937.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1
SwissprotQ9SSE51e-120COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLM8C1900.0M8C190_AEGTA; Uncharacterized protein
TrEMBLW5I9E00.0W5I9E0_WHEAT; Uncharacterized protein
STRINGMLOC_61919.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.42e-96CONSTANS-like 9