PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT08830
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 168aa    MW: 18382.8 Da    PI: 9.6062
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT08830genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00075880123
              EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
              ++C+ Cg+ F +   L  H  +H
  EMT08830 58 FVCKTCGRAFETFQALGGHRTSH 80
              89*********999998888777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.4925885IPR007087Zinc finger, C2H2
SuperFamilySSF576671.23E-758130No hitNo description
SMARTSM003550.425880IPR015880Zinc finger, C2H2-like
PfamPF139126.3E-105882IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SMARTSM003551.1108130IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39108135IPR007087Zinc finger, C2H2
PfamPF139129.1E-9108133IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKRAREEEPV VSLALSLRTD SSATSTTTSD SSTGAPALVP RKRARRGRAV ATSGEGEFVC  60
KTCGRAFETF QALGGHRTSH LRGRHGLELG VGVARAIKQR KRQEEKQHDC LICGLGFETG  120
QALGGHMRRH REEMALSDAM DRWVALSDQE AGHQHAADRP PVLLELFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3696831e-133AK369683.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2095K21.
GenBankAK3721981e-133AK372198.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147P16.
GenBankEU8125631e-133EU812563.1 Hordeum vulgare subsp. vulgare Rpg4 gene, complete sequence; RGA1 (RGA1) gene, complete cds; Rpg5 gene, complete sequence; PP2C (PP2C) gene, complete cds; and ADF3 gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198415.11e-119zinc finger protein ZAT6-like
TrEMBLA0A453M9J41e-117A0A453M9J4_AEGTS; Uncharacterized protein
STRINGEMT088301e-118(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.11e-20C2H2 family protein