PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT06920
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ERF
Protein Properties Length: 183aa    MW: 19985.9 Da    PI: 6.7833
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT06920genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-1982134156
       AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
               ++y+GVr+++ +g+++AeIrd      ++ r +lg+f+taeeAa+a+++ + +++g+
  EMT06920  82 TKYRGVRRRP-SGKFAAEIRDS---SrQSVRKWLGTFDTAEEAARAYDRSAYAMRGH 134
               69********.7*********3...2236**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.66E-2782142No hitNo description
PfamPF008477.0E-1482134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-2883142IPR001471AP2/ERF domain
SMARTSM003808.0E-3183147IPR001471AP2/ERF domain
PROSITE profilePS5103222.22183141IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2183142IPR016177DNA-binding domain
PRINTSPR003674.3E-98495IPR001471AP2/ERF domain
PRINTSPR003674.3E-9107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MATICEAKCR PEKENADKGL QKLKDHESQP DPNRSTLNLN QVDPERRAGD TNHTSSAVDN  60
QVMEGGGGWG DQAGKDGGGE STKYRGVRRR PSGKFAAEIR DSSRQSVRKW LGTFDTAEEA  120
ARAYDRSAYA MRGHLAVLNF PAEARNYVRG GSSSSQQQVI ELECLDDAVL QDMLRDGGGG  180
RNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-30711692114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061622e-33AP006162.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1331F11.
GenBankAP0149652e-33AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126172e-33CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193660.11e-83ethylene-responsive transcription factor 14-like
SwissprotQ9LTC54e-30ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLM8AYZ51e-133M8AYZ5_AEGTA; Ethylene-responsive transcription factor ERF098
STRINGEMT069201e-134(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-29ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]