PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT06248
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 644aa    MW: 71692.4 Da    PI: 8.1694
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT06248genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87.2e-17293383199
               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
               f+k + +s+v k  +l +p +f+ eh  + + ++t++lede+g  ++ ++  rk++    l++GW +Fv  +gL +gD v+F+l+g ++f  +v ++r+
  EMT06248 293 FVKLMQKSHVVKGFWLGVPLNFCGEHL-P-KHDVTIVLEDEDGHGFDTNYLARKQG----LSGGWHGFVVRHGLMVGDAVIFQLVGPKRF--KVYILRE 383
               899***********************5.3.3679****************555555....9************************98888..8888875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-19287384IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-22289383IPR015300DNA-binding pseudobarrel domain
CDDcd100172.04E-23291382No hitNo description
PfamPF023621.9E-15293383IPR003340B3 DNA binding domain
SMARTSM010193.6E-18293384IPR003340B3 DNA binding domain
PROSITE profilePS5086312.478293384IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MAIDEPIKVT PSPSPSSSAS SAPAPIIICF STPLNSFIYG KNFLGFLHAI FVDLFMWFLQ  60
IETERERKRG TPAGDPHSAK SKMRQKMVHP RHALLDERSS RHGDDDDFDP MGKGGTPAGD  120
SPHSARTKMG HKMSLAHRRL SFLDDGSGIS RHIAAAAAAA DDDGGAFELM KNTPVDDSDD  180
DFVPLIMMRT KNVKSGRGKH PGFQYKHKAR RTITKTYKRN KTENPARSKR HGKRKLEKKP  240
MLVDNNNISK SNKGTDADVE PEIPDDDGRK KYASALDRAL EVENKLPAEG PSFVKLMQKS  300
HVVKGFWLGV PLNFCGEHLP KHDVTIVLED EDGHGFDTNY LARKQGLSGG WHGFVVRHGL  360
MVGDAVIFQL VGPKRFKVYI LRENKFTTTD GPLGLLSLDT SMENNILEET SYEDVKSKKD  420
LELTKVITNK ASDNDSNDLF SEEAVNGGIR SAADPDPDFD AVKTFRAFKT VVDSSVIDRK  480
LVPDHQLWRY YKLCGARKAF LHRRLPKHIN PTLATGVIAE TASIAKGIRS YPTTSSSSFE  540
DLAAWKKTLE SFELLGMDVS FMRKRVDELL FLLDASPSDD HPSEGYEEAM KLERARATEK  600
VRALESKMAS LKDALKEMDM EMEEIAGEKR GHADAMLQLA AAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228235KRHGKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199236.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLM8BHR00.0M8BHR0_AEGTA; B3 domain-containing protein
STRINGEMT062480.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.16e-34B3 family protein