PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT05990
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 69aa    MW: 7428.55 Da    PI: 8.8275
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT05990genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.71.1e-14733127
              --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
              +++elC+f++r+G+Ck+G +CkF H++
  EMT05990  7 PGEELCKFYSRYGICKFGVNCKFDHPM 33
              689**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.971634IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-7633IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-7733IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-12733IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-61031IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MGLPLRPGEE LCKFYSRYGI CKFGVNCKFD HPMAAPMGVY AYGYSASASP NAPMGRRLLE  60
SPSGSAYAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3679462e-87AK367946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065F23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151757.11e-40zinc finger CCCH domain-containing protein 12-like
SwissprotQ5JLB51e-29C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A3B6GZA35e-40A0A3B6GZA3_WHEAT; Uncharacterized protein
TrEMBLA0A3B6GZA82e-39A0A3B6GZA8_WHEAT; Uncharacterized protein
TrEMBLA0A453GAT12e-39A0A453GAT1_AEGTS; Uncharacterized protein
TrEMBLM8AWC42e-42M8AWC4_AEGTA; Zinc finger CCCH domain-containing protein 12
STRINGEMT059903e-43(Aegilops tauschii)
STRINGTraes_3DL_2E5A96ACF.15e-40(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.12e-16zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]