PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT05951
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family TCP
Protein Properties Length: 577aa    MW: 61551 Da    PI: 8.4828
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT05951genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.89.5e-352643811105
       TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 
               aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai el++ + +++  +  +++++ s++  s +            
  EMT05951 264 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIRNAKAAIEELPDRPEEAPPTAdPEAAEQMSEQVTSTSsygfgnpggtam 364
               689**************************************************************444443333222222222211111244666667666 PP

       TCP  89 ...........kaaksaakskksqksaa 105
                          +           q s++
  EMT05951 365 tnsflqhslgaD-----------QVSDS 381
               433333333331...........22222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-31266378IPR005333Transcription factor, TCP
PROSITE profilePS5136932.615267325IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MAGSGSKSFT SRSIAPELIP CGPEEDVAVR VALGRSRRKP VRVSARTPSV ENPLPPPKWR  60
SPSGVRTQWW TRNPSVGANM ARRAGRARQR AREAATSLVA VDIGEAKSHS PAPRMVHQSK  120
RRNRVMMDVA GSSQDGSIIE LTSISTIRVS GSNEEEYGMG DVGTLSPLKL EEDKNRLSKG  180
LDPWSNPTAA ATTSTLHYLL QEKERAQAQA QLQIYHQQGF GYLHQHRRQQ AGGGGADGGS  240
SGESTPVADA LATAFGSGRI VRSAAGRKDR HSKVCTARGL RDRRVRLAAH TAIRFYDVQD  300
RLGYDRPSKA VDWLIRNAKA AIEELPDRPE EAPPTADPEA AEQMSEQVTS TSSYGFGNPG  360
GTAMTNSFLQ HSLGADQVSD SVKSLFPSSS TATASGHDEY RGSPPDLLSR TTSSQPQELC  420
LTLQSNQHNM FSHVSPNHHG IISGAGVPGW PDHGQRMPSS WHASDNDAGE GRGAGGNGDS  480
YMFAGIPARQ GLDQGQLFSS NGETLQSSAA WAASARAWLD PLAGIHQPSA MSGQIGFSHL  540
VGGGGGGGFM GFLAPAGQRL QLQGEEEEEG SDVMRRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-19272326155Putative transcription factor PCF6
5zkt_B4e-19272326155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815346.10.0transcription factor PCF7-like
SwissprotQ8LT051e-155PCF7_ORYSJ; Transcription factor PCF7
TrEMBLM8AN450.0M8AN45_AEGTA; Uncharacterized protein
STRINGEMT059510.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-39TCP family protein