PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT05403
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 354aa    MW: 37511.4 Da    PI: 5.5801
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT05403genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-05242265123
               EEETTTTEEESSHHHHHHHHHH.T CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
               ++Cp C k+F+r  n+++H ++ H
  EMT05403 242 FSCPVCFKTFNRYNNMQTHYKRkH 265
               89*******************999 PP

2zf-C2H211.30.0011272292323
               ETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
               C  Cgk F  k + ++H +++
  EMT05403 272 CRRCGKAFAVKGDWRTHEKNC 292
               *****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.0E-11238288No hitNo description
Gene3DG3DSA:3.30.160.601.9E-6242266IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.658242269IPR007087Zinc finger, C2H2
SMARTSM003550.003242265IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280244265IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-4268290IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355140270290IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.538270290IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MENPYTTFLK NYQQHRYYFS PTPVPAPVAS TTAPPPLSAY SSSPFFSPPP PPAPPSSPPL  60
REALPLLSLA PASRRSRERR SGPGPDDSDD GDEEDGEEGK QAPGPAASSS LHHNQQLAGR  120
QLFADLNSKA TDDAMDSEAG GAAGDVTVAL HIGLPSAGTA AGLISGISAA ARAARDDEEE  180
EDDRVSRELS GGGAEGDGDD DGENEAAVAP VLGFASTPIG RLNKGQYWIP TPTQILIGPT  240
QFSCPVCFKT FNRYNNMQTH YKRKHGLKPF LCRRCGKAFA VKGDWRTHEK NCGKLWYCLC  300
GSEFKHKRSL KDHARAFGQG HGALGGAGLD DDDDCAVSDV EHDGAAAAVA ARSP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568140.0AK356814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1040D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180661.11e-157zinc finger protein WIP2-like
SwissprotQ9SVY19e-63ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLM8BF950.0M8BF95_AEGTA; Protein TRANSPARENT TESTA 1
STRINGEMT054030.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.13e-42WIP domain protein 4
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]