PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT04828
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 468aa    MW: 51995.5 Da    PI: 10.2878
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT04828genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.26.3e-1313861896
              --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
        B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
              +p+kf++++ggk   s+t+ le+ +g  ++v++ ++   ++++ ++GW+ Fv+a+ ++e+D+++F+++++s+fe  v v
  EMT04828 13 IPNKFIDHFGGK--ISRTIELESHNGGMYTVEV-FELMNETVLRRRGWEAFVDAHSIEENDSLLFRHIEKSRFE--VLV 86
              9*****888988..888****************.444444566679*********************9989995..444 PP

2B334.44e-111732511995
               -HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEE CS
        B3  19 pkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkld.gr.sefelvvk 95 
               p  f++     ++es+ ltl+   ++++W   l +rk+++++vlt + W +F ++ng++egD +vF+ + g+ ++ +++v+
  EMT04828 173 PQAFCRGA--LPRESQNLTLQRpGKSKKWHPWLYIRKSQCGHVLTgSRWVGFLRDNGVREGDLCVFQPVkGTgTRSKFTVH 251
               55666433..3567889***995566*******889999999998678*******************55254455555555 PP

3B344.52.8e-143814621699
               EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SS.SEE..EEEEE-S CS
        B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgr.sefelvvkvfrk 99 
               ++++  +a+e+ +++ e + +tl  ++ + Wev++  r ++g+  l+ GW++F+++n+L++ D+++F+ ++++ ++ +++v+++r+
  EMT04828 381 VTISCAYAAEY-LPPGERVAVTLV-RRKKAWEVEM--RARGGGRALAHGWRGFARDNRLRVQDVCLFQpMEKNrQSLTMTVHIIRH 462
               46777778777.445555566654.589*******..77777777***********************5457779999****9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.912190IPR003340B3 DNA binding domain
SMARTSM010195.9E-6290IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-161292IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-141291IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-101386IPR003340B3 DNA binding domain
CDDcd100171.13E-141388No hitNo description
PROSITE profilePS508639.812155256IPR003340B3 DNA binding domain
SMARTSM010190.017159256IPR003340B3 DNA binding domain
PfamPF023622.7E-9173252IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-11173252IPR015300DNA-binding pseudobarrel domain
CDDcd100173.50E-12173253No hitNo description
Gene3DG3DSA:2.40.330.105.5E-11173253IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-16356463IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-18357464IPR015300DNA-binding pseudobarrel domain
CDDcd100172.73E-17361461No hitNo description
SMARTSM010198.0E-5363463IPR003340B3 DNA binding domain
PfamPF023621.7E-12368462IPR003340B3 DNA binding domain
PROSITE profilePS5086310.56407463IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MAWGSRPAVN PAIPNKFIDH FGGKISRTIE LESHNGGMYT VEVFELMNET VLRRRGWEAF  60
VDAHSIEEND SLLFRHIEKS RFEVLVLDSD DCEKVLPSAG IKSASCNVQE SRSVDCIGIS  120
SSVSYIDISS SSGDDTTRSP GSKRFATCER GDSSHPRKTA VNDSSSEEDS GDPQAFCRGA  180
LPRESQNLTL QRPGKSKKWH PWLYIRKSQC GHVLTGSRWV GFLRDNGVRE GDLCVFQPVK  240
GTGTRSKFTV HLLHEPLGAS GSTGPKKRVG NTRVNSAAPE RSTTAYGHGA TAMEKAAPPA  300
PTTRRVNKEQ DDGWNHGRQT QRARQLPKPA RPYILSSTAR LTEEQEREVD RTARAIGSRV  360
PAYVSVMNRS SVGVGNRIYN VTISCAYAAE YLPPGERVAV TLVRRKKAWE VEMRARGGGR  420
ALAHGWRGFA RDNRLRVQDV CLFQPMEKNR QSLTMTVHII RHSGKRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188321.11e-177B3 domain-containing protein Os03g0620400-like
TrEMBLM8BDJ90.0M8BDJ9_AEGTA; B3 domain-containing protein
STRINGEMT048280.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-12B3 family protein