PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT04775
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 837aa    MW: 94988 Da    PI: 7.3478
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT04775genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06108127625
               -SGGGGTS--TTTTT-SS-S CS
   zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
               C+f+++t  C++G rC++ H
  EMT04775 108 CPFYLKTAACRFGVRCSRVH 127
               ******************99 PP

2zf-CCCH246.9e-08237264126
               --S---SGGGGTS..--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
               +k ++C  ++r+   tC++G  C+F+H+
  EMT04775 237 WKSAICGEYMRSRfkTCSHGVACNFIHC 264
               7999***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.131102130IPR000571Zinc finger, CCCH-type
SMARTSM003567.8103129IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-4107127IPR000571Zinc finger, CCCH-type
PRINTSPR018481.1E-36108127IPR009145U2 auxiliary factor small subunit
PRINTSPR018481.1E-36127147IPR009145U2 auxiliary factor small subunit
Gene3DG3DSA:3.30.70.3302.1E-25133232IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS501029.917134234IPR000504RNA recognition motif domain
CDDcd125401.43E-50135232No hitNo description
SMARTSM003617.7E-6156230IPR003954RNA recognition motif domain, eukaryote
PRINTSPR018481.1E-36163178IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549281.49E-16165232IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018481.1E-36191213IPR009145U2 auxiliary factor small subunit
PRINTSPR018481.1E-36218242IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010310.314236266IPR000571Zinc finger, CCCH-type
SMARTSM003560.02236265IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5237264IPR000571Zinc finger, CCCH-type
PRINTSPR018481.1E-36256268IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MGRFEYNDDH RDETEDDGEW EYVEDGPAEI IWQGNEIIVK KKKIKIPKKT EDKPLSQEED  60
RPTSNPLPPQ SVAVASQRRE PSLSARELLE KVAQETPNFG TEQDKAHCPF YLKTAACRFG  120
VRCSRVHFYP DKSCTLLMKN MYNGPGLVLE QDEGLEFTDE EIEQSYEEFY EDVHTEFLKF  180
GELVNFKVCR NGSFHLRGNV YVHYKALDSA LLAYNSMNGR YFAGKQITCE FVALTKWKSA  240
ICGEYMRSRF KTCSHGVACN FIHCFRNPGG DYEWADWDNP PPKYWSRKMA ALFGPSDDAI  300
FDKASDTPDF ERLHSSDRKR LRSSDDRREA SAANEQRGQE IEDDTGRYCS PMENERVSQA  360
HKHEEKHRDG HGDGARGYNG KTKSRKHRSE RHESLESGCS DWPSEFADAG TSRSPSGSKS  420
TNRYNNHKRS RRQSSDDPNL ERGYSTADKS SGKAHIAKSS SRHYVEDDSY GEKVSGRGKS  480
GKHSDRCDDP DDRWLATNSD VDSDAEAQFP RSSSGVGKGG RNDNAPPDED DRYQRSSSRS  540
ARSRAKDDKS SRKRKKHHSE IRKNSDSDDG PSDSSDIRDL SSHAWRSRSR SNTVRLRGRG  600
SIHRPTRSVG VVFHRSIYTH KYGAPELLPN HVNFAGRHLP VHILMSMKIT DVNMETDALA  660
NHINLLPMHS LNSSMKATDV NMEIEALANH IRLTRRGEGE GTDVGNKKTK KKIFRVPQEE  720
LDDILSFQLP PAWPSLGKRC PSLVGELEKM KESFLAEREK MRREYQIMGY ATYEAEVTDD  780
DDDEEDTLVA IPAATSFHGE KDDAAATSSP WIIPRGRGRK RFRPGVVKQA SGVKKIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A5e-33992639167Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1551555RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3618180.0AK361818.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1150D09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147330.10.0zinc finger CCCH domain-containing protein 16
SwissprotQ6YVX90.0C3H16_ORYSJ; Zinc finger CCCH domain-containing protein 16
TrEMBLM8ASY40.0M8ASY4_AEGTA; Zinc finger CCCH domain-containing protein 16
STRINGEMT047750.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92961317
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-136C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]