PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT02450
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 391aa    MW: 44452.7 Da    PI: 4.9711
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT02450genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.3e-06113136226
               -S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
               k  lC ff   G+C+ G +CkF+H+
  EMT02450 113 KSILCEFFKV-GQCQKGFKCKFSHD 136
               6779**9999.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.831111138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6111136IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4111137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4113137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.338184222IPR000571Zinc finger, CCCH-type
SMARTSM003565.8184221IPR000571Zinc finger, CCCH-type
PfamPF165431.9E-15241319IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MPPKKAAASK ADVAKKQKVV EDKTFGLKNK NKSKNVQKYV QSLHQSVQPK PDPTKTAAKA  60
RGNTQIEAVN SLIRLLCSSD KKKEEEKARE KELNDLFKVA VSQPKVPVGV DPKSILCEFF  120
KVGQCQKGFK CKFSHDLNVQ RKGEKIDIYS DKRDGEEEDT MDDWDQETLE KVIASKNAEY  180
QQNKPTDIVC KHFLDAVEKK QYGWFWVCPN GGKECRYRHA LPPGYVLKSQ MKALLEEESK  240
KVAIEDEIED QRRKVQTTTP MTTELFMEWK RRKAEEKEAG LAALRADRAK NDRMSGRELF  300
MADASVFIDD AEAYEVYERR EEPQANQEQG KKSQDEGPSS STSNGKEADE ELDDEDLDDD  360
DDLDLDELNE LEASLSRTSI QIREPGEGTS S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251272RRKVQTTTPMTTELFMEWKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2507660.0AK250766.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf88g07, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159449.10.0zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLR7W0S40.0R7W0S4_AEGTA; Zinc finger CCCH domain-containing protein 11
STRINGEMT024500.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-142C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]