PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT02379
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 980aa    MW: 106274 Da    PI: 5.8895
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT02379genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.25.7e-08346367325
               S---SGGGGTS--TTTTT-SS-S CS
   zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                ++C+ffa+ G C++G++C++ H
  EMT02379 346 KRPCKFFAE-GRCRRGETCPYLH 367
               689******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.3E-5340369IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.831343370IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-6343369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-7344368IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5346367IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 980 aa     Download sequence    Send to blast
MAGVARKGRS KWDTQEISPD IVEISEDDSP PKNTDDRRKD VIPTQDLTND NGKRLGESSN  60
LKPDAFMHQG STEYEQERTD GLNKDVKERQ SKASSERSHA PRMAEEAHNN DDWGKLASLE  120
KATGNQAMSR NADDRRRGDG WGTAASRGYS SRVSSGPDAW KQRTRSPSPR GTEVAPEAGV  180
ESELEGEAEV EVGVLILTVD LIGGLREAEY LEGLLCSAEI LQLVDAEEAC IAGFLMKMVG  240
EGSSTSLIPQ TRGKGMAIRT RISWIHENQM TMYGAGNLEV ILMKVLGKDL NPEEITGLLI  300
NAMSLSKEGA AEVQVADMFM MSPLLMLDGE MMLGKQLMTE HRREQKRPCK FFAEGRCRRG  360
ETCPYLHEEA PQSQMGPGAS DEPPKYSGGR TPRGNYSNWG EETNATHAGS HILSRDDREN  420
TGSQHTARSD TGYGYKSRQL EDAGRDQYQI IPQEDFGSQG RNKPEMSASK QPQFLSPIQT  480
SADSMNNDKV SDMDGLSASA TTGNLSMQTG IHAANLLGGQ SLSQIAQSQD AVPQTSGAPI  540
HPVTSQQQDA TSVLPFNIQP HESNFSLHPN RQDQFSNFSL HPDRQDQFVA SQATANNSAP  600
SMQNQPVAAP YMGHSQHSYT LGSQALPAFN GHNFSVAGQV PQDRPTPFYA GQSQATVDMS  660
NPNQESGTHS MQNTHSFQPV APNMQARSQA LQGLSGVPGQ DTGTQSIQNA HNFQPVAPPY  720
MQNRGQTLQG LSILPSSSSA DMPGAPPVPP NEEEIRRSLT SLAATLIMQP GTVAGLQLPQ  780
PILNPSLMAS LSAVEPSQWP WAQQHKAGTT QLAQQQQAGM TQLAQSEQQA PQQTLPAPST  840
AVGSSNGHNP AQSIGQTAAT SVVTAPQAAE NKKVEAKAKD NDGEQDGDKN KKGNKEESKA  900
LKMFKLALAD FVKDALKPTW KEGQLTREVH KTIVKKVVDK VTSTVENTPP TKEKIDVYMS  960
YSKEKLSKLV QAYVGKYVKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2497200.0AK249720.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf45g01, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174957.10.0zinc finger CCCH domain-containing protein 55-like isoform X2
SwissprotQ6YYC00.0C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55
TrEMBLN1QR930.0N1QR93_AEGTA; Zinc finger CCCH domain-containing protein 55
STRINGEMT023790.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77663443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-08C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]