PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT02298
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 690aa    MW: 79199.9 Da    PI: 9.5719
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT02298genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH261.6e-08668689526
               --SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
               +Cr+++++  C+y + CkF+Hg
  EMT02298 668 ICRYYQQGLRCPYEGDCKFSHG 689
               8******88************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.301.7E-9110153IPR003034SAP domain
SuperFamilySSF689062.56E-7111153No hitNo description
PROSITE profilePS508008.548118152IPR003034SAP domain
PROSITE profilePS5010313.112663690IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-5664689IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-4665690IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5667689IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-5668689IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MAAAAARTGL PPADHDPLEG AESESEEEVE SGEERGDDGS EAETLADLYG PDAGSDKDPS  60
FDPAADKRAV GEAALWSRMA RLSISARKGR KAPVALEMGN EDIDLLAMVD KLMHDGQLEK  120
LKVYECKAYL RIHKLRLGGK KEELLNRIRD HIEVKLFGDV KYPVSSFVLN CKGDACKGDV  180
VMFEQNIYRR KKGDPRGIKG RLCGQRTNAG RIIKESYGTA KQQHTFTPWP DEKERSRVLE  240
EKHARGFQAR KSREVRIHEK EIDKMRRFNR FNEGRSDSLQ QGEPWNARQQ QISSKQNPAV  300
HLFHQQFLYQ GPSVQHGKPE KTRQQQILSR PTTSEQIFKH PTQHDNHRPT PAQQMFKNPQ  360
EHNNHHQQQN KVLPQEGTTK TVSILGRAPC LHYGGPGNAV QQQKLSKPTP MEQIRNQSQP  420
LKHEHRNLVL PQEDAKKGTN RVHSIDHGKA PCLQYAGPGN AMQQQSARPA LPQQIKNPPQ  480
YAGPGNAMQQ QSSRPALPQQ IKNPPQPPKH QHTEVLRQED GNRTYRVEPV DRRNNNYHNT  540
TYDESAFQGR GTQHAKTHQH GSNGHPHAHG DSQWHQPLRP RIQDFSSRNQ EGDYRDHRQT  600
TQEQYNPEER YHHNQYGRGQ MIQDQYQPQK IHHQNGHDSW RMNHNQYHPQ ENHHQNYRHA  660
QQFPALKICR YYQQGLRCPY EGDCKFSHGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3749660.0AK374966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3081H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151517.10.0zinc finger CCCH domain-containing protein 62-like isoform X1
TrEMBLR7W0C60.0R7W0C6_AEGTA; Zinc finger CCCH domain-containing protein 62
STRINGEMT022980.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131072022