PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT02241
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 228aa    MW: 25073.2 Da    PI: 10.286
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT02241genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.21.6e-5321291128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100
               lppGfrFhPtdeel+ +yL+++++++++++ ++i++vdiyk++Pw Lp+k++ +++ewyfF++rd+ky++g r+nra+ sgyWkatg+dk++ ++ +ge v
  EMT02241   2 LPPGFRFHPTDEELILHYLRNRAAESPCPV-SIIADVDIYKFDPWALPSKASYGDREWYFFTPRDRKYPNGVRPNRAAGSGYWKATGTDKPIRCSaTGESV 101
               79****************************.89***************988899**************************************99878999* PP

       NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
               g+kk Lvfykgr pkg kt+W+mheyrl
  EMT02241 102 GVKKALVFYKGRPPKGIKTNWIMHEYRL 129
               **************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-592135IPR003441NAC domain
PROSITE profilePS5100555.7142148IPR003441NAC domain
PfamPF023658.9E-283129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MLPPGFRFHP TDEELILHYL RNRAAESPCP VSIIADVDIY KFDPWALPSK ASYGDREWYF  60
FTPRDRKYPN GVRPNRAAGS GYWKATGTDK PIRCSATGES VGVKKALVFY KGRPPKGIKT  120
NWIMHEYRLA AADGHAGNTY RPMKFRNASM RLGQMDSSAS TSVAGEGAAG KRKRPSEDGD  180
HNRPTNQPAT AVTGKKPNSS CLGATTFQTG NNTLQGSLGQ GHQTLLHF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-64213920155NAC domain-containing protein 19
3swm_B7e-64213920155NAC domain-containing protein 19
3swm_C7e-64213920155NAC domain-containing protein 19
3swm_D7e-64213920155NAC domain-containing protein 19
3swp_A7e-64213920155NAC domain-containing protein 19
3swp_B7e-64213920155NAC domain-containing protein 19
3swp_C7e-64213920155NAC domain-containing protein 19
3swp_D7e-64213920155NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:20005003}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2510580.0AK251058.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97a05, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162550.11e-111NAC transcription factor NAM-B1-like
SwissprotD2SMN43e-75NAMB1_HORVS; NAC transcription factor NAM-B1
TrEMBLN1QU791e-170N1QU79_AEGTA; NAC domain-containing protein 29
STRINGEMT022411e-171(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-75NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Jamar C, et al.
    NAM-1gene polymorphism and grain protein content in Hordeum.
    J. Plant Physiol., 2010. 167(6): p. 497-501
    [PMID:20005003]