PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT01999
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 534aa    MW: 60123 Da    PI: 9.6591
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT01999genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.45.2e-13121001199
               HHTT-EE--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
        B3  11 lksgrlvlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
               ++++ l+lp kfa+ ++g +  +++++l+   ++   W+v++ ++   g+++l++GW++F+ a++L+ g f+v+++ g    + l+vkvf+ 
  EMT01999  12 NSLKKLRLPGKFARVFDGHE--PFEVKLREagRRHHLWDVEVVFDAE-GHIYLGRGWEQFAGAHDLRLGHFLVLSYGGChAHAMLTVKVFDG 100
               3445599******9999885..566777763266699*****88777.5899************************9777999999999985 PP

2B343.46e-144525341799
               E--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
        B3  17 vlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
               +l  kfa  h  g  k+++++l+l    ++rsW  kl++  + ++    kGW +F+++n+L+egD ++Fkl ++ +  +++v ++r+
  EMT01999 452 YLVEKFAGGHpcG--KHRGVELVLLReGKSRSWPTKLRH--SLRGSRVLKGWPSFARDNQLREGDLCLFKLLKSeELLTMMVYIVRR 534
               5667777777543..446666666653788*******55..444433446********************88776889999998875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.9282101IPR003340B3 DNA binding domain
CDDcd100171.76E-13399No hitNo description
SuperFamilySSF1019361.57E-145103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-135102IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-95101IPR003340B3 DNA binding domain
PfamPF023627.6E-1111100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-11230332IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-10232339IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.063238339IPR003340B3 DNA binding domain
CDDcd100179.85E-8238336No hitNo description
SMARTSM010190.071238342IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-14416532IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-12417533IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-11420533No hitNo description
SMARTSM010192.0E-4428533IPR003340B3 DNA binding domain
PfamPF023627.9E-12452534IPR003340B3 DNA binding domain
PROSITE profilePS5086311.899472534IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MAFEFFTILL SNSLKKLRLP GKFARVFDGH EPFEVKLREA GRRHHLWDVE VVFDAEGHIY  60
LGRGWEQFAG AHDLRLGHFL VLSYGGCHAH AMLTVKVFDG SMCRRDYQND NDASSGSSGD  120
SGNTLFLTMY MVRLLGQQGA EGEGEVPPQT EAEEGDGEQG VSKMSNPCDS DGSQKGRSYS  180
SEKLSAEDSL FVDNSVASAN LQTLSCNYVL STQCYLTKAQ KVKIDALMEK IQPKFTVLVV  240
QMKKSNVKQH ATLIIHKDYA LKHFPCEDTT VILQLPGKNK DWKCTFRIRP SGTSDAGRRN  300
LFLYNFAYDN HIREGDICLF QPITNVKQRT FIVTVHVLHK VSIDHYAGGR TDIGSNHGRK  360
RAKMGAVKDK PRTDGEEHKI SEDSEGASEG LFMLSNGVCL TPAQRMKLLK IVKKIKFKPP  420
FYVAIMSKST VCQRGSQNNP MLRFGSQYAT RYLVEKFAGG HPCGKHRGVE LVLLREGKSR  480
SWPTKLRHSL RGSRVLKGWP SFARDNQLRE GDLCLFKLLK SEELLTMMVY IVRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-156HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198708.10.0B3 domain-containing protein Os03g0619600-like
TrEMBLN1QU520.0N1QU52_AEGTA; B3 domain-containing protein
STRINGEMT019990.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.15e-07B3 family protein