PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT01172
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GRAS
Protein Properties Length: 389aa    MW: 42423.2 Da    PI: 6.2377
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT01172genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS49.86.4e-16922031112
      GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
               l++lL++c +av++gd+el++  L+ +    as d   p++Rla+ f+ ALa r+++ ++++++al+ ++t++     ++aa + f+e++ +l+++  taN
  EMT01172  92 LITLLYSCSTAVAKGDKELVNVGLEMICSGlASDDVgWPIHRLASSFADALALRMVQPWQGVCRALQLQKTTP--APATAAACRHFVEMCLFLRLTRTTAN 190
               5789*********************9966536666448*****************************999996..7777889999**************** PP

      GRAS 100 qaIleavegeerv 112
                 I +a+ +e+ v
  EMT01172 191 YGIIDATRTERNV 203
               ********99776 PP

2GRAS113.82.3e-35208384155313
      GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.................desvsleserdevLklvkslsPkv 238
                e l+ tg  La+ Ae+l++ f+f+++  +  + l++e L v++gE+l++ + lqlhrll                 ++ +++  + d++L+ + +lsPk+
  EMT01172 208 DEFLSVTGALLAREAESLHIGFHFHPVKLQINQLLSIEPLGVRSGETLVIVSTLQLHRLLadefvevaarphdrkgkAQAHATMMRADALLRDLAKLSPKL 308
               5668889*******************877777888***************************************9986666666689************** PP

      GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetle 313
               +vv+e e++hn ++F +r+ +al+yy alfd+le+++p+     er+ vEr ll +ei+++v   ga+rrerhe+++
  EMT01172 309 MVVTEPEVNHN-GEFTARVENALNYYGALFDALEESVPTRGsaMERADVERCLLLQEIRDIVPYDGAQRRERHERMG 384
               **********6.57**********************998765799*****************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.56466389IPR005202Transcription factor GRAS
PfamPF035142.2E-1392203IPR005202Transcription factor GRAS
PfamPF035147.8E-33208384IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MGSIMNPENR GQETTGPVYA PTPLRTTWSV DLGNGLNGTF VHSNINGTTR LLVPEVRSAA  60
APATTSPTAP PTTGSPTAPA SQDQYEQSAI DLITLLYSCS TAVAKGDKEL VNVGLEMICS  120
GLASDDVGWP IHRLASSFAD ALALRMVQPW QGVCRALQLQ KTTPAPATAA ACRHFVEMCL  180
FLRLTRTTAN YGIIDATRTE RNVVLHEDEF LSVTGALLAR EAESLHIGFH FHPVKLQINQ  240
LLSIEPLGVR SGETLVIVST LQLHRLLADE FVEVAARPHD RKGKAQAHAT MMRADALLRD  300
LAKLSPKLMV VTEPEVNHNG EFTARVENAL NYYGALFDAL EESVPTRGSA MERADVERCL  360
LLQEIRDIVP YDGAQRRERH ERMGSGRDG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR7W2740.0R7W274_AEGTA; Uncharacterized protein
STRINGMLOC_14828.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137161330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-17scarecrow-like 3