PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT01168
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 469aa    MW: 49978.9 Da    PI: 7.7438
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT01168genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22e-115479227
              -S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
              +++ C +++rtG C +GdrC+++H++
  EMT01168 54 DQADCIYYLRTGACGFGDRCRYNHPR 79
              6789********************96 PP

2zf-CCCH39.78e-13104128327
               S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
               ++ C ++++tGtCk+G++Ck++H++
  EMT01168 104 QPVCEYYMKTGTCKFGSNCKYHHPK 128
               789********************96 PP

3zf-CCCH39.97.2e-13148173227
               -S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
               ++++C+++++tG+Ck+G++CkF+H++
  EMT01168 148 GEKECSYYMKTGQCKFGSTCKFHHPE 173
               7899********************96 PP

4zf-CCCH38.42e-12301327127
               --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
               +++++C++++rtG Ck+G++Ck++H++
  EMT01168 301 PGQPECQYYMRTGDCKFGATCKYHHPR 327
               5789*********************96 PP

5zf-CCCH344.9e-11350373427
               ---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                +C+++a++G+C+yG  Ck+ H++
  EMT01168 350 QPCSYYAQNGYCRYGVACKYDHPM 373
               69********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.6055280IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-55279IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-95479IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-65580IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-45879IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.042101129IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-7101128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-7103130IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10104128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-6106130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812146174IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6146173IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-10148173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6149173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4152172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.319300328IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6300327IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-10302327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5304328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-4306327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.126346374IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-7346373IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-5348375IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8350373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-5350371IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MEPRPAAAAG GGGEGEAGRG ADPDTGLEGS MWRMGLAGDG GGEGDGARLP ERPDQADCIY  60
YLRTGACGFG DRCRYNHPRD RGGTEFGGGA KNAVALDYPE RLGQPVCEYY MKTGTCKFGS  120
NCKYHHPKQD GSVQPVMLNS NGFPLRPGEK ECSYYMKTGQ CKFGSTCKFH HPEFGGVPVT  180
PGIYPPLQSS TVPSPHPYAP LTNWQMGRPP VLPGSYMPGS YTPMMLSSGM IPLQGWSPYP  240
ASVNPVASGG AQQTVQAGPM YGIGHHGSSS TIAYGGPYMP YSSSTIQSSN NQQEHGFPER  300
PGQPECQYYM RTGDCKFGAT CKYHHPRDWS SPKSNYMFSP FCLPLRPGAQ PCSYYAQNGY  360
CRYGVACKYD HPMGTLGYSS SPFPLSDMPI APYPLGFSIA TLAPSSSSQD LRPEYISAKD  420
PSVNQVGSPV TASEPSGSIL PKGVFPPDTV MRAQTNTTTG GSSSPGGGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3716260.0AK371626.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2138L05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200471.10.0zinc finger CCCH domain-containing protein 6-like isoform X1
SwissprotQ5NAW20.0C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLR7VZD70.0R7VZD7_AEGTA; Zinc finger CCCH domain-containing protein 6
STRINGEMT011680.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-126C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]