PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT00868
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 211aa    MW: 23922.9 Da    PI: 9.2658
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT00868genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.11.8e-49101481128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkklel..eevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.... 95 
               lppGfrF P+deelv++yL+ kv++++++   + ++ evd++ +ePw+Lp  +k +++ewyfFs rd+kyatg r+nrat+sgyWkatgkd+ + s     
  EMT00868  10 LPPGFRFYPSDEELVCHYLHGKVANQRFTGgaTGTMIEVDLHVHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATRSGYWKATGKDRVIRSPrsss 110
               79*************************6651134699*************87788999*************************************996655 PP

       NAM  96 .kgel......vglkktLvfykgrapkgektdWvmheyrl 128
                +         vg++ktLvfy+grap+g+kt Wvmhe+r+
  EMT00868 111 sS--SsgratiVGMRKTLVFYRGRAPNGSKTCWVMHEFRI 148
               50..0555566***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-587167IPR003441NAC domain
PROSITE profilePS5100555.40810167IPR003441NAC domain
PfamPF023657.0E-2811148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGLRDIEMTL PPGFRFYPSD EELVCHYLHG KVANQRFTGG ATGTMIEVDL HVHEPWELPD  60
VAKLSTNEWY FFSFRDRKYA TGLRTNRATR SGYWKATGKD RVIRSPRSSS SSSSGRATIV  120
GMRKTLVFYR GRAPNGSKTC WVMHEFRIEN PHSPPKEDWV LCRVFDQKKA DTEYAVDGKQ  180
ELGGGGVAQK AAAVSGSNYV QEEHYNYNSL M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-4811704168NO APICAL MERISTEM PROTEIN
1ut4_B2e-4811704168NO APICAL MERISTEM PROTEIN
1ut7_A2e-4811704168NO APICAL MERISTEM PROTEIN
1ut7_B2e-4811704168NO APICAL MERISTEM PROTEIN
3swm_A2e-4811707171NAC domain-containing protein 19
3swm_B2e-4811707171NAC domain-containing protein 19
3swm_C2e-4811707171NAC domain-containing protein 19
3swm_D2e-4811707171NAC domain-containing protein 19
3swp_A2e-4811707171NAC domain-containing protein 19
3swp_B2e-4811707171NAC domain-containing protein 19
3swp_C2e-4811707171NAC domain-containing protein 19
3swp_D2e-4811707171NAC domain-containing protein 19
4dul_A2e-4811704168NAC domain-containing protein 19
4dul_B2e-4811704168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640020.0AK364002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020L05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173052.11e-149NAC domain-containing protein 76-like
SwissprotQ9FLJ23e-61NC100_ARATH; NAC domain-containing protein 100
TrEMBLR7VZ441e-158R7VZ44_AEGTA; NAC domain-containing protein 77
STRINGEMT008681e-159(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-77NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]