PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011398015.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family C2H2
Protein Properties Length: 105aa    MW: 11871.8 Da    PI: 8.5983
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011398015.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000111637323
                    ETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirt.H 23
                    C +C++ F +  +L +H+++ H
  XP_011398015.1 16 CFYCDREFQDEATLITHQKSkH 37
                    99*****************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121717.4E-61436IPR022755Zinc finger, double-stranded RNA binding
SuperFamilySSF576672.81E-61558No hitNo description
Gene3DG3DSA:3.30.40.100.0011649IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE patternPS0002801637IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MVRKRRRQEE DVKPWCFYCD REFQDEATLI THQKSKHFKC ETCHKRLVTV RALAVHSLQV  60
MKPWQGGGCQ GVTVEGLGVK LEPCCSPCSP VNASTAMADL LRAPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
126RKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011398015.12e-74Zinc finger protein 207
SwissprotQ9C5G06e-19SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBLA0A087SHC33e-74A0A087SHC3_AUXPR; Zinc finger protein 207
STRINGENSGACP000000256502e-17(Gasterosteus aculeatus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41351011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.13e-20C2H2 family protein