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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011398015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
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Family | C2H2 | ||||||||
Protein Properties | Length: 105aa MW: 11871.8 Da PI: 8.5983 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 16 | 37 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C +C++ F + +L +H+++ H XP_011398015.1 16 CFYCDREFQDEATLITHQKSkH 37 99*****************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12171 | 7.4E-6 | 14 | 36 | IPR022755 | Zinc finger, double-stranded RNA binding |
SuperFamily | SSF57667 | 2.81E-6 | 15 | 58 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 0.001 | 16 | 49 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE pattern | PS00028 | 0 | 16 | 37 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MVRKRRRQEE DVKPWCFYCD REFQDEATLI THQKSKHFKC ETCHKRLVTV RALAVHSLQV 60 MKPWQGGGCQ GVTVEGLGVK LEPCCSPCSP VNASTAMADL LRAPL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 6 | RKRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011398015.1 | 2e-74 | Zinc finger protein 207 | ||||
Swissprot | Q9C5G0 | 6e-19 | SUF4_ARATH; Protein SUPPRESSOR OF FRI 4 | ||||
TrEMBL | A0A087SHC3 | 3e-74 | A0A087SHC3_AUXPR; Zinc finger protein 207 | ||||
STRING | ENSGACP00000025650 | 2e-17 | (Gasterosteus aculeatus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4135 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30970.1 | 3e-20 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 23613397 |