PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 906311
Common NameARALYDRAFT_906311
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 237aa    MW: 25678.1 Da    PI: 7.5999
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
906311genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.29.5e-322103197
  DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
             +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++ +++++sl+yeA+ r+ +Pv+Gavg++++++++++q+++e++l+
  906311   2 SCNGCRVLRKGCSENCILRPCIqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNICQAAVETVLR 103
             6***********************************************************************************************999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.5231107IPR004883Lateral organ boundaries, LOB
PfamPF031953.0E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQC  60
PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNICQAAVET VLRGGSLKPI PELLNGGGFA  120
GFPSPTSDEA SEICTEMLNL RKDDDSGDRN IYHHCRFSSS RSRSTASPPK RKRLSSELDL  180
SLIPTFPIKT VPFKEDTPSM YSEESVTTVS FRDNNAGDRY VRGGGGETAK LLNLFA*
Cis-element ? help Back to Top
SourceLink
PlantRegMap906311
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0857610.0AY085761.1 Arabidopsis thaliana clone 17840 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876006.11e-176LOB domain-containing protein 38
SwissprotQ9SN231e-155LBD38_ARATH; LOB domain-containing protein 38
TrEMBLD7LT021e-174D7LT02_ARALL; LOB domain protein 38
STRINGscaffold_502015.11e-175(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-147LOB domain-containing protein 38