PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 905662
Common NameARALYDRAFT_905662
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 180aa    MW: 20214.4 Da    PI: 8.9127
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
905662genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP91.22.2e-28141575105
     TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssg................. 88 
             +++  ++h k ggRdRR+R++ ++a ++F+L++eLGf++d++t+ WLlq+a+pai ++tg   +++++ ++++++++ + +    +                 
  905662  14 TRTPRDRHVKIGGRDRRIRIPPSVAPQVFKLTKELGFKTDGETVGWLLQNAEPAIFAATGHgvNTTPS-DVTHVHNHTNRG---YNhftinigdhnnvfsytg 112
             56678********************************************************7633333.332222222222...2233344566666667777 PP

     TCP  89 ............................kaaksaakskksqksaa 105
                                         k+  s+++++++q++++
  905662 113 anighhemvfpgvtmteyaasstlpardKEGVSNQNQEQQQQQPQ 157
             777777778888777776666666655433333333333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-2517154IPR005333Transcription factor, TCP
PROSITE profilePS5136922.6731771IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MDSRNKINNR QKATRTPRDR HVKIGGRDRR IRIPPSVAPQ VFKLTKELGF KTDGETVGWL  60
LQNAEPAIFA ATGHGVNTTP SDVTHVHNHT NRGYNHFTIN IGDHNNVFSY TGANIGHHEM  120
VFPGVTMTEY AASSTLPARD KEGVSNQNQE QQQQQPQPQF ELGKVEMPAD EKTYVWREE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00390DAPTransfer from AT3G45150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026862e-79CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankAL1386492e-79AL138649.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T14D3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875715.11e-133hypothetical protein ARALYDRAFT_905662
SwissprotQ9M1U41e-57TCP16_ARATH; Transcription factor TCP16
TrEMBLD7LNL81e-133D7LNL8_ARALL; Putative uncharacterized protein
STRINGscaffold_501366.11e-133(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157501016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45150.11e-48TCP domain protein 16