PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 905655
Common NameARALYDRAFT_905655
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 219aa    MW: 24714.4 Da    PI: 8.9965
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
905655genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP78.91.4e-2416911081
     TCP 10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec...eaesssss 81
             i T+   R  R+Rl+++ca ++F+L++eLGf++d++t+ WLl++a+pai ++tg      s   + e+     +s  ++
  905655 16 RIPTSSKDRSNRIRLPVSCASQIFQLTQELGFKTDGETVGWLLRNAEPAIFAATGHsvnttS---N-ETsneFIHSYMNM 91
            57799999************************************************654331...2.1111111222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136915.4341268IPR017887Transcription factor TCP subgroup
PfamPF036342.5E-201790IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVSRNNKNNI ERKERRIPTS SKDRSNRIRL PVSCASQIFQ LTQELGFKTD GETVGWLLRN  60
AEPAIFAATG HSVNTTSNET SNEFIHSYMN MGNHNNYHFT DTSGVVYHNN YNVTIDNSIH  120
YADTSGVVSH QRENITGHHG LVFPTAAMTE YGPSTSFPAK DMRENGHLMV NHNSRPVMLR  180
PSMPQQQPQP QPLFDEFNKV EMGNSKQAMS PHKTNDRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMap905655
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875712.11e-164transcription factor TCP16
TrEMBLD7LNL11e-163D7LNL1_ARALL; Uncharacterized protein
STRINGscaffold_501359.11e-163(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16163510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45150.11e-29TCP domain protein 16