PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 901824
Common NameARALYDRAFT_901824
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 157aa    MW: 16752.4 Da    PI: 10.4919
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
901824genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00133456123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             + C+ C+k F++   L  H  +H
   901824 34 FACKTCNKEFPSFQALGGHRASH 56
             78**********99999998887 PP

2zf-C2H212.20.0005478100123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++Cp+Cg  F     L  H+r+H
   901824  78 HECPICGAEFAVGQALGGHMRKH 100
              79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.14E-832100No hitNo description
PfamPF139126.9E-133358IPR007087Zinc finger, C2H2
SMARTSM003550.233456IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.3693461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
PROSITE profilePS501579.82778105IPR007087Zinc finger, C2H2
SMARTSM003550.06378100IPR015880Zinc finger, C2H2-like
PfamPF139123.2E-1078102IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MERGRSEMEM INNMANCLIL LSKAHQNDTK SRVFACKTCN KEFPSFQALG GHRASHRRSA  60
ALEGHAPPSP KRVKPVKHEC PICGAEFAVG QALGGHMRKH RGGSGGGVGR SLAPATAPVT  120
MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRLIF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0071840.0AC007184.4 Arabidopsis thaliana chromosome 2 clone T11P11 map mi54, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankBT0293300.0BT029330.1 Arabidopsis thaliana At2g28710 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002879181.11e-111zinc finger family protein
SwissprotQ424103e-43ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLD7LK781e-111D7LK78_ARALL; Zinc finger family protein
STRINGscaffold_401325.11e-111(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.16e-97C2H2 family protein