PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v1.0, v2.0, v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

900451

Common Name

ARALYDRAFT_900451

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GeBP

Protein Properties

Length: 161aa MW: 18089.5 Da PI: 10.0025

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
900451	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	43.9	6.6e-14	1	43	55	97
DUF573 55 veKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +eK+r+L+kK++++ kaksg+ep+f k+hd+k+felsk +Wg 900451 1 MEKLRNLRKKYENNLVKAKSGDEPTFVKTHDRKAFELSKFVWG 43 79****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.9E-11	1	43	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MEKLRNLRKK YENNLVKAKS GDEPTFVKTH DRKAFELSKF VWGAIESAVK SSGKSKKSSK 60 SKKVESVNHE LDSSLPNGKN EGAADLDTFP KSSLVRWLVS FGFDEFSAQQ GLSCLASEDK 120 KRFEEKWKAL QVREFEFYSQ KSGFLHEVVA KMAEAFPSNA *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC011661	3e-35	AC011661.5 Genomic sequence for Arabidopsis thaliana BAC T23J18 from chromosome I, complete sequence.
GenBank	CP002684	3e-35	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	AB493449	3e-35	AB493449.1 Arabidopsis thaliana At1g11510 gene for hypothetical protein, partial cds, clone: RAAt1g11510.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002884224.1	1e-113	hypothetical protein ARALYDRAFT_900451
TrEMBL	D7L4K6	1e-113	D7L4K6_ARALL; Putative uncharacterized protein
STRING	scaffold_304421.1	1e-112	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G11510.1	3e-56	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	900451
Entrez Gene	9320290