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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 900451 | ||||||||
Common Name | ARALYDRAFT_900451 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GeBP | ||||||||
Protein Properties | Length: 161aa MW: 18089.5 Da PI: 10.0025 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 43.9 | 6.6e-14 | 1 | 43 | 55 | 97 |
DUF573 55 veKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +eK+r+L+kK++++ kaksg+ep+f k+hd+k+felsk +Wg 900451 1 MEKLRNLRKKYENNLVKAKSGDEPTFVKTHDRKAFELSKFVWG 43 79****************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.9E-11 | 1 | 43 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MEKLRNLRKK YENNLVKAKS GDEPTFVKTH DRKAFELSKF VWGAIESAVK SSGKSKKSSK 60 SKKVESVNHE LDSSLPNGKN EGAADLDTFP KSSLVRWLVS FGFDEFSAQQ GLSCLASEDK 120 KRFEEKWKAL QVREFEFYSQ KSGFLHEVVA KMAEAFPSNA * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC011661 | 3e-35 | AC011661.5 Genomic sequence for Arabidopsis thaliana BAC T23J18 from chromosome I, complete sequence. | |||
GenBank | CP002684 | 3e-35 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | AB493449 | 3e-35 | AB493449.1 Arabidopsis thaliana At1g11510 gene for hypothetical protein, partial cds, clone: RAAt1g11510. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002884224.1 | 1e-113 | hypothetical protein ARALYDRAFT_900451 | ||||
TrEMBL | D7L4K6 | 1e-113 | D7L4K6_ARALL; Putative uncharacterized protein | ||||
STRING | scaffold_304421.1 | 1e-112 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G11510.1 | 3e-56 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | 900451 |
Entrez Gene | 9320290 |