PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 898520
Common NameARALYDRAFT_898520
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family AP2
Protein Properties Length: 575aa    MW: 62774.4 Da    PI: 6.4357
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
898520genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.91.2e-13180239155
     AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
             s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+ ++ a++k++g
  898520 180 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARSYDLAALKYWG 239
             57*******************666664477446**********99*************98 PP

2AP2476.4e-15284333355
     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
             y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  898520 284 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 333
             9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.2E-11180239IPR001471AP2/ERF domain
CDDcd000181.02E-20180249No hitNo description
SuperFamilySSF541719.15E-16180248IPR016177DNA-binding domain
SMARTSM003802.9E-28181253IPR001471AP2/ERF domain
PROSITE profilePS5103218.716181247IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-14181247IPR001471AP2/ERF domain
PRINTSPR003675.2E-6182193IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18282342IPR016177DNA-binding domain
CDDcd000182.84E-24282343No hitNo description
SMARTSM003801.5E-32283347IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-18283341IPR001471AP2/ERF domain
PROSITE profilePS5103219.506283341IPR001471AP2/ERF domain
PfamPF008471.5E-9284333IPR001471AP2/ERF domain
PRINTSPR003675.2E-6323343IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MNSNNWLGFP LSPNNSSLPP HEYNLGLVSD HMDNPFQTQE WNMINPHGGG GGEGGEVPKV  60
ADFLGVSKPD ENQSNHLVAY NDSDYYFHTN SLMPTVQSND VVVAACDSNT PNNSSYHELQ  120
ESAHNLQSLT LSMGTTAGNN AVDKASPSET TGDNTSGGVL AVAETATPRR ALDTFGQRTS  180
IYRGVTRHRW TGRYEAHLWD NSCRREGQSR KGRQVYLGGY DKEDKAARSY DLAALKYWGP  240
STTTNFPITN YEKEVEEMKH MTRQEFVAAI RRKSSGFSRG ASMYRGVTRH HQHGRWQARI  300
GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF EINRYDVKAI LESSTLPIGG  360
GAAKRLKEAQ ALESSRKREA EMIALGSSFQ YGVGSSTGSG SSSSRLQLQP YPLSIQQPLE  420
PFLSLQNNDI SHYSNNNAHD SSSFNHHSYI QTQLHLHQQT NNYLQQQSSQ NSQQLYNAYL  480
HSNPALLHGL VSTSIVDNNN NNGGSSGSYN TAAFLGNHGI GIGSSSTVGS AEEFPTVKTD  540
YDMPSSDGTG GYSGWTGESV QGSNPGGVFT MWNE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00368DAPTransfer from AT3G20840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5065490.0AY506549.1 Arabidopsis thaliana PLETHORA1 (PLT1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002883273.10.0hypothetical protein ARALYDRAFT_898520
SwissprotQ5YGP80.0PLET1_ARATH; AP2-like ethylene-responsive transcription factor PLT1
TrEMBLD7KZX20.0D7KZX2_ARALL; Putative uncharacterized protein
STRINGscaffold_302490.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30152767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.10.0AP2 family protein