PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 892497
Common NameARALYDRAFT_892497
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 334aa    MW: 36552.1 Da    PI: 5.2797
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
892497genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57334.17.5e-11193217226
  DUF573   2 lfqrlwseeDeivlLqGlidfkakt 26 
              fqrlwseeDeivlLqG+idf ++t
  892497 193 PFQRLWSEEDEIVLLQGMIDFSSDT 217
             59*******************9987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAKKKQSQTL VTPSAAKKSS EVASTSKKPL GVTSPVKKQS GVTSPVKKPS EAASLAKKPL  60
EVVASTSKKP LKETSTTAKK MQPEPVKNPP PESSSDSEEE SDSSSEEEDE SSKDFGKKTA  120
SAPVVTNENS DSKLESETES VSYSKTEPTT KTPTTDAVVV SSPNKKRQSE GEPSTEVKRA  180
KTETETETAK KPPFQRLWSE EDEIVLLQGM IDFSSDTDHD KKCFELANMI WGSDVDATLV  240
KSTKKIKVDD SLKVDVVNVE CDWFERSFIV GAFKNLGAGV DEETLKEKWY LVPVRTRKMI  300
EEKIKSVQAN EIKLVLQKLD VLHEVSSMMA NSD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891811.10.0hypothetical protein ARALYDRAFT_892497
TrEMBLD7KM550.0D7KM55_ARALL; Putative uncharacterized protein
STRINGscaffold_105291.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00610.16e-46DNA-binding storekeeper protein-related transcriptional regulator