PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 879944
Common NameARALYDRAFT_679388
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 165aa    MW: 18568.2 Da    PI: 8.7978
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
879944genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.52.8e-44141131100
  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
             +Ca+Ck+lrrkC+kdCv+apyfpa++p kfa+vhk+FGasnv k+l++l+e++r+da++s+vyeA+ar++dPvyG+vg+i++l++qle+l+++la +++e
  879944  14 PCAGCKLLRRKCVKDCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAVNSMVYEANARVQDPVYGCVGTISSLHRQLETLQTQLAFAQAE 113
             7**********************************************************************************************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.18113114IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-4214111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MRQKAHRHGR TVSPCAGCKL LRRKCVKDCV FAPYFPAKEP YKFAIVHKIF GASNVNKMLQ  60
ELSENHRSDA VNSMVYEANA RVQDPVYGCV GTISSLHRQL ETLQTQLAFA QAELIHIRTL  120
HRIDTKPPPY AASTVTFPSN KDFYSDVDMA FVYEDGARDS LWSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-431311510112LOB family transfactor Ramosa2.1
5ly0_B1e-431311510112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap879944
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinin. {ECO:0000269|PubMed:17485849}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738420.0AB473842.1 Arabidopsis thaliana ASL9 mRNA for ASYMMETRIC LEAVES2-like 9 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869105.11e-123LOB domain-containing protein 3
RefseqXP_020869106.11e-123LOB domain-containing protein 3
RefseqXP_020869107.11e-123LOB domain-containing protein 3
RefseqXP_020869108.11e-123LOB domain-containing protein 3
RefseqXP_020869109.11e-123LOB domain-containing protein 3
RefseqXP_020869110.11e-123LOB domain-containing protein 3
RefseqXP_020869111.11e-123LOB domain-containing protein 3
RefseqXP_020869112.11e-123LOB domain-containing protein 3
RefseqXP_020869113.11e-123LOB domain-containing protein 3
RefseqXP_020869114.11e-123LOB domain-containing protein 3
SwissprotQ9SA511e-112LBD3_ARATH; LOB domain-containing protein 3
TrEMBLD7KEG51e-121D7KEG5_ARALL; Predicted protein
STRINGAl_scaffold_0001_17111e-122(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16530.11e-115ASYMMETRIC LEAVES 2-like 9
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]