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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 874794 | ||||||||
Common Name | ARALYDRAFT_674238 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 240aa MW: 27102.9 Da PI: 9.5331 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.5 | 2.7e-14 | 31 | 89 | 36 | 97 |
EEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 36 ltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +++ ++g sWev + +k+++ y+l+ +GW +Fv++n L ++f++F+++g+++f ++ +f 874794 31 NKIRAQWGSSWEVAI--SKNPRFYYLEkSGWGKFVRDNALGNNEFITFTHKGKMRF--TLNIF 89 567899*********..******777759*********************999999..55555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.307 | 1 | 92 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.1E-8 | 7 | 92 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.04E-9 | 17 | 90 | No hit | No description |
SuperFamily | SSF101936 | 1.37E-12 | 32 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.1E-12 | 32 | 89 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.0E-13 | 33 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0026 | 144 | 235 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.73E-7 | 162 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-5 | 162 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 6.626 | 184 | 235 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MAINPDYLRC KEERNNESFF KEKIDIVSIL NKIRAQWGSS WEVAISKNPR FYYLEKSGWG 60 KFVRDNALGN NEFITFTHKG KMRFTLNIFK QDGKEMMQPP QSSSFLASSS RGIKTEQRED 120 DKKEEVVVSS ELSPTTAAES NGGTSKRNLN LGKKKARGDS AAFDKAHMPK ENAMFKIHHP 180 DGKRSWNVTY LASTTVAFSA GWICLIKEYP IVAGVTCKLT LIKPDELLLV VLRPEEETE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002885973.1 | 1e-180 | predicted protein | ||||
Swissprot | Q5BPT7 | 9e-88 | Y2621_ARATH; B3 domain-containing protein At2g16210 | ||||
TrEMBL | D7L4F0 | 1e-180 | D7L4F0_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0003_3435 | 1e-179 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16210.1 | 8e-83 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 874794 |
Entrez Gene | 9319980 |