PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 869802
Common NameARALYDRAFT_669246
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 293aa    MW: 33694.1 Da    PI: 4.865
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
869802genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.22.6e-07170214655
             HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
             +++ r RR+ri ++ +eL +l+P       +Kl+ ae+ + A +Y+k Lq
  869802 170 SIAARERRRRIAEKTHELGKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 214
             567899*****************86.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-10162222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.697164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-9167221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-5170214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-9170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.83E-4186217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSMDCLSYFF NYDPPVQLRD CFIPEMDMII PETDSFLFQS LPQLEFHQPL FQEEAPSQTH  60
FDPFCDQFLS PQEIFLPNPK TEIFNETHDL DFLLPTPKRQ KLVNSSYHCN NTHNHFQSHN  120
PNFFDPFGDL DFVPEASTFP EFRVPDFSLA FKVGRGDQDD TKKPTLSSQS IAARERRRRI  180
AEKTHELGKL IPGGQKLNTA EMFQAAAKYV KFLQSQVGIL QLMQTTKKGS SNVQMETRFL  240
LESQAVQEKL STEEVCLVPC EMVQDLTTEE TIWKNPNISR EINKLLSKDL AN*
Cis-element ? help Back to Top
SourceLink
PlantRegMap869802
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2344120.0AY234412.1 Arabidopsis thaliana hypothetical protein (At2g34820) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002879517.10.0transcription factor bHLH53
SwissprotQ84RD00.0BH053_ARATH; Transcription factor bHLH53
TrEMBLD7LH480.0D7LH48_ARALL; Predicted protein
STRINGAl_scaffold_0004_19650.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]