PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 865377
Common NameARALYDRAFT_664821
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 266aa    MW: 30362.5 Da    PI: 7.5739
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
865377genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57394.41.2e-2980171298
  DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
             +fqr wseeD+i+lL G+idf  +tg+s++dd+++f e+ k+sisf+v++ +q+v+Ki +LK+K+  k++        + ++ hd++++el+kkiWgs
  865377  80 MFQRSWSEEDQIMLLEGMIDFSRDTGTSVYDDMNGFSEKHKDSISFDVKNvNQFVKKIWSLKNKYFLKRRS------RVSTNVHDKNCLELAKKIWGS 171
             79**********************************************7549**************99998......8999***************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.6E-2381170IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MTKKQSQPSK REIEEDPSTE VEVKRAKMEN GPETENKPIF QRIKKDLVSE SETHSSESDS  60
ETEPAATKTT PPAAMAKNPM FQRSWSEEDQ IMLLEGMIDF SRDTGTSVYD DMNGFSEKHK  120
DSISFDVKNV NQFVKKIWSL KNKYFLKRRS RVSTNVHDKN CLELAKKIWG SDVDATLKVD  180
DSFKVDGVKV ECDWFERSFL VGALKNLGAG IDEETLKEKW SLAPLKTRKR IEEKMKSVQA  240
NELKLVLRKL DVLHEMTTFV TSKSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875508.10.0predicted protein
TrEMBLD7LNW70.0D7LNW7_ARALL; Predicted protein
STRINGAl_scaffold_0005_8560.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00610.14e-61DNA-binding storekeeper protein-related transcriptional regulator