PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 861018
Common NameARALYDRAFT_660462
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 183aa    MW: 20680.2 Da    PI: 6.4053
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
861018genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601201.3e-3771071100
  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
             +C aCk+lrrkC++dCv++pyf  eq +++fa+vhk+FGasnv+k l +lp ++r+ a+ ++ yeA  r+rdPvyG+v++i++l+qq+ +l++e++ l+++
  861018   7 SCGACKFLRRKCNRDCVFSPYFSYEQaSSHFAAVHKVFGASNVSKHLLHLPLHQRSVAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQ 107
             6***********************9978*******************************************************************998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.4326108IPR004883Lateral organ boundaries, LOB
PfamPF031958.7E-357103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MAGHGSSCGA CKFLRRKCNR DCVFSPYFSY EQASSHFAAV HKVFGASNVS KHLLHLPLHQ  60
RSVAAITISY EALSRMRDPV YGCVAHIFAL HQQVVTLQEE IEFLGSQMTN FSYSTQNGSQ  120
LNNIPEFVNQ MTVDTTNFVD ESVLNNVDGR NCLDGFFTNS EEMLVNHQWL QNMDYYYYAP  180
QN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3431327130LOB family transfactor Ramosa2.1
5ly0_B2e-3431327130LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap861018
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738570.0AB473857.1 Arabidopsis thaliana ASL24 mRNA for ASYMMETRIC LEAVES2-like 24 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873236.11e-136LOB domain-containing protein 33
SwissprotQ9LHS81e-126LBD33_ARATH; LOB domain-containing protein 33
TrEMBLD7LZ361e-135D7LZ36_ARALL; Predicted protein
STRINGAl_scaffold_0006_5271e-136(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-128LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]