PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 859515
Common NameARALYDRAFT_658959
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 244aa    MW: 27883.1 Da    PI: 10.151
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
859515genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573102.53.6e-3269158398
  DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
              +rlw+eeDei+  + +idfka+tg+sp+dd+++f++++kksisf+vsksq+ +Kir LKkK+ +k+kk      +s++++hd+k+++l k+iWgs
  859515  69 LHRLWTEEDEISDRRNMIDFKAETGTSPHDDLNKFFDIAKKSISFDVSKSQFGDKIRGLKKKYFGKRKK------KSVESDHDKKCLGLVKSIWGS 158
             68*******************************************************************......8999***************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-2470157IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
NPKISFRRCP TSDSDSDKPI VFTKQMRMEG TDSPAVKSGK KRASEGTTSK DIKRAKKVSG  60
DNDNKKPHLH RLWTEEDEIS DRRNMIDFKA ETGTSPHDDL NKFFDIAKKS ISFDVSKSQF  120
GDKIRGLKKK YFGKRKKKSV ESDHDKKCLG LVKSIWGSED KEVVILGGDS EWSNWFEKSF  180
LVRVIVSLGM DECFVKWKWS KVPVEIKKKI EEKMKMVEGK EFQLLSLKID VLKEVTSLIA  240
ETN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002868359.11e-174predicted protein, partial
TrEMBLD7MHG11e-174D7MHG1_ARALL; Predicted protein (Fragment)
STRINGAl_scaffold_0007_30141e-174(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44810.12e-95DNA-binding storekeeper protein-related transcriptional regulator