PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 496250
Common NameARALYDRAFT_496250
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 331aa    MW: 36680.2 Da    PI: 7.6097
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
496250genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP96.55.1e-3034145389
     TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................ssssaseceaesssss 81 
             g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak  +++l+ +                        s           s ss
  496250  34 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKDDVDKLPPLqfphgfnqmypnlifgnsgfgespS-----------SASS 125
             78*************************************************************5555555444444444444332220...........2222 PP

     TCP  82 asnsssg............k 89 
             +++++ +            +
  496250 126 TAFPGTNlgflenwdlggsS 145
             22222223344444444321 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.8E-2835155IPR005333Transcription factor, TCP
PROSITE profilePS5136929.7893593IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MLQQQRPSSV SSSSRQWTSA FRNPRIVRVS RTFGGKDRHS KVCTVRGLRD RRIRLSVPTA  60
IQLYDLQDRL GLSQPSKVID WLLEAAKDDV DKLPPLQFPH GFNQMYPNLI FGNSGFGESP  120
SSASSTAFPG TNLGFLENWD LGGSSRTRSR LTDTTTTQRE SFDLDKGKWI KHDENSNQDH  180
QGFDTNHQHF PLTNPYNNTS SYYNLGHLQQ SLDQSGNNVT VAISNVAANN NNNLNLPPPS  240
SSAGDGSQLF FGPTPPAMSS LFPTYPSFLG ASHHHHHVVD GAGHLQLFST NSNTASQQQL  300
ITGNTSLIRP FHHLMSSNHD TDRHSSDNES D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-194094155Putative transcription factor PCF6
5zkt_B3e-194094155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBM25215497Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap496250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0082690.0AB008269.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSL3.
GenBankBT0294890.0BT029489.1 Arabidopsis thaliana At5g60970 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878514.10.0transcription factor TCP5
SwissprotQ9FME30.0TCP5_ARATH; Transcription factor TCP5
TrEMBLD7MUG00.0D7MUG0_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.8__2066__AT5G60970.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-151TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]