PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 493876
Common NameARALYDRAFT_493876
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 234aa    MW: 26030 Da    PI: 6.8965
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
493876genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP105.58.6e-3353145388
     TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssaseceaesssssasnsssg 88 
             +kk+++ ++h kv+gR+RRvRl+ +caar+++L++eLG+++d++t+eWLlqqa+p+i+ +tg+                s          +   ++ ++ +g
  493876  53 KKKKPNRDRHRKVEGRGRRVRLPPLCAARIYQLTKELGHKSDGETLEWLLQQAEPSIISATGNgikpigttttdsvsqpS---------LTADLMVRHNFEG 145
             69*************************************************************66666543322211110.........1111111122222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136924.63258112IPR017887Transcription factor TCP subgroup
PfamPF036341.8E-2658161IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDPKKNPTLP SFLNPSPQNL DNDKKRKQTE VKGFDIVVRE KEEEEQIQLL DEKKKKPNRD  60
RHRKVEGRGR RVRLPPLCAA RIYQLTKELG HKSDGETLEW LLQQAEPSII SATGNGIKPI  120
GTTTTDSVSQ PSLTADLMVR HNFEGASRTQ MAANETEQTT GGFDLNYGIG FGFNGVSEIG  180
FGNNQTPGLE LGLSQVAVLN PQVYQQMGQE QSRVLHHHHS YEDQQQSAEK NGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMap493876
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0100725e-81AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6.
GenBankCP0026885e-81CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870658.21e-174transcription factor TCP6
SwissprotQ9FLM61e-121TCP6_ARATH; Transcription factor TCP6
TrEMBLD7MIZ91e-172D7MIZ9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__3309__AT5G41030.11e-173(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157431416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41030.11e-124TCP family protein
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]