PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 493420
Common NameARALYDRAFT_493420
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CPP
Protein Properties Length: 652aa    MW: 71716.7 Da    PI: 5.2078
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
493420genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR32.32e-103623881440
     TCR  14 lkkYCeCfaagkkCseeCkCedCkNke 40 
             +k YCeCfaag++C e C+C dC+Nk 
  493420 362 KKSYCECFAAGVYCIEPCSCIDCFNKP 388
             599**********************96 PP

2TCR51.22.5e-16435473139
     TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
             ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  493420 435 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNA 473
             589***********************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163432.285353475IPR005172CRC domain
SMARTSM011145.5E-6356390IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.3E-7363387IPR005172CRC domain
SMARTSM011143.7E-17435476IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.0E-11437473IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MDTPQKSVTQ IGTPISKSRF EDSPVFNYIN SLSPIRPVRS IPNPNQFSSL NFTSPPSVFT  60
SPHLTSSHKE SRFFKTHNSS SSDPTNPVES REDESTSYED VVAEGEEDTK DLNIDSSMRE  120
EETNRDDSVS SPCGRDTTDL SLVPYAPRGE NGTSEDAGME LQKMYDNVQG KTETPDWESL  180
ISDASELLIF DSPDASEAFR CFMMQRASNS EARFSNGVEV QTMQPDSNKE PQSSDAIPYE  240
VHSGITSQAV SLLHRGIRRR CLDFEMPGNK QTNNAACESS SRCVVPSIGL HLNAILMSSK  300
DCKTNVSHDY SCSGKIQVGL QSSISTMQDT LDQTENEARE DADQDVPVEP ALQELNLSSP  360
KKKSYCECFA AGVYCIEPCS CIDCFNKPIH EDVVLATRKQ IESRNPLAFA PKVIRNSESV  420
LETGDDASKT PASARHKRGC NCKKSNCLKK YCECYQGGVG CSINCRCEGC KNAFGRKDGS  480
SNDMEAQQEE ENETSEKSRT AKVQQNTEVL MRKEARSDLP TTPTPIYRPE LVQIPFSSSK  540
NRMPPPQSLL GGRSSSGIFN SQYLRKPDIS LTQSRIKKSF ETVAEDGAEE MPEILIHSPI  600
PNIKSVSPNG KRVSPPHMES SSSGSILGRR SGGRKLILQS IPSFPSLTPQ H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1139047249120Protein lin-54 homolog
5fd3_B1e-1139047249120Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00433DAPTransfer from AT4G14770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap493420
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615390.0AL161539.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 39.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973370.0Z97337.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872377.10.0protein tesmin/TSO1-like CXC 2 isoform X1
SwissprotF4JIF50.0TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBLD7MBC70.0D7MBC7_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__2853__AT4G14770.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14672891
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.10.0TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]