PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 489189
Common NameARALYDRAFT_489189
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 244aa    MW: 26078 Da    PI: 10.1466
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
489189genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.74.3e-3829134389
     TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg................. 88 
             +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++a+ s   +s+ s +                 
  489189  29 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASVSIRGTSSTSLSssldhkptsllggsspf 131
             79*************************************************************9999977722222222221111122333334455543333 PP

     TCP  89 ..k 89 
                
  489189 132 ilG 134
             330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.4E-3434151IPR005333Transcription factor, TCP
PROSITE profilePS5136927.8923488IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSINNNNNND GVMISSNGAL IEQPSSVVVK KPPAKDRHSK VDGRGRRIRM PIICAARVFQ  60
LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTTPASFST ASVSIRGTSS TSLSSSLDHK  120
PTSLLGGSSP FILGKRVRAD EDNNNHNSGG KDETFTTTPA GFWAVPARPD FGQVWSFTGA  180
PQEMFLQQHH QQPLFVHQQQ QQQAAMGEAS AARVGNYLPG HLNLLASLSG GSPGSGRREE  240
DPR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap489189
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076480.0AB007648.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKD15.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872048.11e-180transcription factor TCP7
SwissprotQ9FMX21e-144TCP7_ARATH; Transcription factor TCP7
TrEMBLD7M1Q21e-179D7M1Q2_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__2323__AT5G23280.11e-179(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-107TCP family protein