PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 485830
Common NameARALYDRAFT_485830
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family AP2
Protein Properties Length: 431aa    MW: 48362.3 Da    PI: 5.0947
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
485830genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.21.5e-1164120155
     AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
             s y+GV++++++gr++A+++d  s+n  ++k+   g ++++e Aa  ++ a++k++g
  485830  64 SIYRGVTRHRWTGRFEAHLWDkSSWNSiQNKKGKQGAYDSEEAAAHTYDLAALKYWG 120
             57*******************77779998855555********************98 PP

2AP252.89.7e-17163215156
     AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
             s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g+
  485830 163 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYNTQEEAAAAYDMAAIEYRGA 215
             89****99**********99966...3.6*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.84E-1664129No hitNo description
PfamPF008476.4E-964120IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-1464129IPR016177DNA-binding domain
SMARTSM003803.3E-1865134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-1265129IPR001471AP2/ERF domain
PROSITE profilePS5103218.58465128IPR001471AP2/ERF domain
PRINTSPR003672.7E-66677IPR001471AP2/ERF domain
PfamPF008473.6E-12163214IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-18163224IPR016177DNA-binding domain
CDDcd000181.01E-15163224No hitNo description
PROSITE profilePS5103218.373164222IPR001471AP2/ERF domain
SMARTSM003806.7E-25164228IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-18164222IPR001471AP2/ERF domain
PRINTSPR003672.7E-6204224IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006110Biological Processregulation of glycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0019432Biological Processtriglyceride biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MKRRLTTSTS SSSPSSSVSS STTTSSPIQS EAPRPKRAKR AKKSSPSGDK SHNPTSPAST  60
RRSSIYRGVT RHRWTGRFEA HLWDKSSWNS IQNKKGKQGA YDSEEAAAHT YDLAALKYWG  120
PDTILNFPAE TYTKELEEMQ RVTKEEYLAS LRRQSSGFSR GVSKYRGVAR HHHNGRWEAR  180
IGRVFGNKYL YLGTYNTQEE AAAAYDMAAI EYRGANAVTN FDISNYIDRL KKKGVFPFPV  240
NQPNHQEAIL VEAKQEIETR EAKEEPREEV KQQYVEEPPQ EEKEEEKAEQ QEAEFVGYKD  300
EGAVVNCCID SSAIMEMNRC GDNNELAWNF CMMDSGFAPF LTDQNLSNEN PIEYPELFNE  360
LAFEDNIDFM FDEAKNDCLS LENLDCCVVG RESPTSSSSP LSCFSTDSAS STTTTTSVSC  420
NYLGLFVGSE *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8852450.0AY885245.1 Arabidopsis thaliana activator of sporamin LUC 1 (ASL1) mRNA, complete cds.
GenBankAY2540380.0AY254038.2 Arabidopsis thaliana WRINKLED1 (WRI1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876251.10.0hypothetical protein ARALYDRAFT_485830
SwissprotQ6X5Y60.0WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLD7LUS80.0D7LUS8_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.5__1822__AT3G54320.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.10.0AP2 family protein