PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 480792
Common NameARALYDRAFT_480792
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 292aa    MW: 33393.3 Da    PI: 10.6102
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
480792genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.92.2e-1919113199
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
             ffkv  + + +++++  lp +f+++++ + e s++++++ ++g sWev +  +k+++  ++ ++GW++Fv++n L   +f++F+++g++ f  +v +f++
  480792  19 FFKVVHSINISSENMRALPHDFVRSFSDQ-ELSRKIKIRAQWGSSWEVGI--SKNPRFyFMEKSGWEKFVRDNALGNSEFITFTHKGKMHF--TVNIFKQ 113
             8899988899999999*******999766.6999****************..******555569********************9999999..9998875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-2013115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.69E-1914120IPR015300DNA-binding pseudobarrel domain
CDDcd100177.64E-1818112No hitNo description
SMARTSM010194.2E-1919114IPR003340B3 DNA binding domain
PROSITE profilePS5086314.09919114IPR003340B3 DNA binding domain
PfamPF023622.1E-1719113IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-14197288IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.136200291IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-11202288IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.3E-16203291IPR003340B3 DNA binding domain
CDDcd100178.08E-9214287No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MARNADYLRC KQERKNESFF KVVHSINISS ENMRALPHDF VRSFSDQELS RKIKIRAQWG  60
SSWEVGISKN PRFYFMEKSG WEKFVRDNAL GNSEFITFTH KGKMHFTVNI FKQDGKEMMQ  120
PPKSRAFLAS SSRIKTEQEE DDMKEEVVVS SNRGPTTAAE SKGRKLNLGK KAAKESQNSK  180
RTEKVVKARR DYTGASSSTA AEFTILFKQG YLIFLRIPNS VAKDLMPDEK TIFKIHHPNG  240
KKSWNVVFLV RFGAFSGGWR RLVKEYPLAV GDTCKFSFIK PDELLLVVSK P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9247410.0AY924741.1 Arabidopsis thaliana hypothetical protein (At2g16210) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002886210.10.0transcriptional factor B3 family protein
SwissprotQ5BPT70.0Y2621_ARATH; B3 domain-containing protein At2g16210
TrEMBLD7L1430.0D7L143_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh2_kg.3__3493__AT2G16210.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.10.0B3 family protein