PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 477490
Common NameARALYDRAFT_477490
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 265aa    MW: 28522.6 Da    PI: 8.4902
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
477490genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.32.7e-294107199
  DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
             +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg+++++++ql+q ++e+++ +
  477490   4 SCNGCRVLRKGCSEDCSIRPCLawiksPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKG 106
             6***********************************************************************************************9998876 PP

  DUF260  99 e 99 
             e
  477490 107 E 107
             6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.9453109IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-234103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPNH  60
LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV EAVMKGEPIK EIATDAATIG  120
QGPPLKIYDI RHISKDDNSA AAAATGSTDL KRAKTRRAKR VSTVEKQAES EGKSGEASHE  180
SSLSHQSEIV AAHEGESKES ESNVSEVLAF SPPTVQGSGE IKLDLTLGLE PVSRAYHVVP  240
VKKRRMGVFG TCQKESTCKT ELML*
Cis-element ? help Back to Top
SourceLink
PlantRegMap477490
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0860610.0AY086061.1 Arabidopsis thaliana clone 20907 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887334.10.0LOB domain-containing protein 41
SwissprotQ9M8860.0LBD41_ARATH; LOB domain-containing protein 41
TrEMBLD7KZI60.0D7KZI6_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__191__AT3G02550.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-179LOB domain-containing protein 41