PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 475419
Common NameARALYDRAFT_475419
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 390aa    MW: 41505.5 Da    PI: 6.6331
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
475419genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP136.42.4e-42452112126
     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............... 88 
             ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  ++s +ss+s+ s++               
  475419  45 TTTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFStLSVSLRSSGSTLSAPpsksvplygalglth 147
             5789*****************************************************************9998888888888866666777888999999999 PP

     TCP  89 ........................kaaksaakskksqksaasalnlakesrakarar..arert 126
                                      +++++++++++q++ ++  +  + sr++ r+   ++e++
  475419 148 qydeqggggvfaahttpllgfhhhLQQQQHHHQNQNQDPVETIPEGENFSRKRYRSVdlSKEND 211
             9999999*****9999988887654444444555555555555555556665555553322222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.2E-4250212IPR005333Transcription factor, TCP
PROSITE profilePS5136928.41151105IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDRNNDTAAV TGGGARQLVD ASLSIVPRST PLEDSTLATT SSTTTTTKRS TKDRHTKVDG  60
RGRRIRMPAL CAARVFQLTR ELGHKSDGET IEWLLQQAEP AIVAATGTGT IPANFSTLSV  120
SLRSSGSTLS APPSKSVPLY GALGLTHQYD EQGGGGVFAA HTTPLLGFHH HLQQQQHHHQ  180
NQNQDPVETI PEGENFSRKR YRSVDLSKEN DDRKQNENKS LKESETPGPA AAPMWAVAPP  240
SRSGAANTFW MLPVPTTTGN QMESSSNNTT TAGHRAPPMW PFVNSAGGGA GGGGGAATHF  300
MAGTGFSFPM DQYRGSPLQL GSFLAQPQPT QNLGLSMPDS NLGMLAALNA AYSRGGNANA  360
DAEQANNAVE HQEKQQQSDH DDDSREENSN
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap475419
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0791310.0AC079131.4 Arabidopsis thaliana chromosome 1 BAC T18I24 genomic sequence, complete sequence.
GenBankAC0796040.0AC079604.5 Arabidopsis thaliana chromosome 1 BAC T15M6 genomic sequence, complete sequence.
GenBankAY0813440.0AY081344.1 Arabidopsis thaliana auxin-induced basic helix-loop-helix transcription factor, putative (At1g58100) mRNA, complete cds.
GenBankBT0084930.0BT008493.1 Arabidopsis thaliana At1g58100 gene, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891334.10.0transcription factor TCP8
SwissprotQ9C5180.0TCP8_ARATH; Transcription factor TCP8
TrEMBLD7KY840.0D7KY84_ARALL; Uncharacterized protein (Fragment)
STRINGfgenesh2_kg.2__549__AT1G58100.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.10.0TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]