PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 474435
Common NameARALYDRAFT_474435
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family SBP
Protein Properties Length: 174aa    MW: 19938.3 Da    PI: 10.1381
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
474435genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1344.8e-4254129277
             -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
     SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
             Cqv++C++d++eak yhrrhkvCevh+ka++v++sgl+qrfCqqCsrfhel+efDe+krsCrrrLa+hnerrrk++
  474435  54 CQVDRCTSDMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHELQEFDEAKRSCRRRLAGHNERRRKSS 129
             **************************************************************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375752.5E-621141IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.101.0E-3248115IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.93251128IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.03E-3753131IPR004333Transcription factor, SBP-box
PfamPF031109.6E-3254127IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MEGKRTQGQG YLKKKSYRVE EEMEYDTDGE EEVGRDRVRG SSGSIDRGGS SRLCQVDRCT  60
SDMKEAKLYH RRHKVCEVHA KASSVFLSGL NQRFCQQCSR FHELQEFDEA KRSCRRRLAG  120
HNERRRKSSG ESSFGEGSGR RGITGQVIQN QERSRVEMTL PMPNSSFKRP QIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-5040127184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0849020.0AY084902.1 Arabidopsis thaliana clone 12071 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891731.11e-124hypothetical protein ARALYDRAFT_474435
SwissprotQ9S7A91e-105SPL4_ARATH; Squamosa promoter-binding-like protein 4
TrEMBLD7KKE31e-124D7KKE3_ARALL; Squamosa promoter-binding-like protein
STRINGfgenesh2_kg.1__4389__AT1G53160.21e-123(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86828118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.22e-74squamosa promoter binding protein-like 4