PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 473685
Common NameARALYDRAFT_473685
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 334aa    MW: 34812.9 Da    PI: 9.6302
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
473685genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.64.5e-3841141289
     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............k 89 
             +++k++++++h kv+gR+RR+R++a caar+F+L++eL +++d++tieWLlqqa+pai+++tgt++++a+ +  ++s +ss+s+ s++            +
  473685  41 TPAKRPSKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATGTGTIPANIStLNVSLRSSGSSLSAPlsksfnigraaqN 141
             789******************************************************************88888888888888665555545555533330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136926.5647101IPR017887Transcription factor TCP subgroup
PfamPF036341.2E-3547150IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MESHNNTTGS AHLVPFMGPI SGSVTTTAQN STTTTVSAAK TPAKRPSKDR HIKVDGRGRR  60
IRMPAICAAR VFQLTRELQH KSDGETIEWL LQQAEPAIIA ATGTGTIPAN ISTLNVSLRS  120
SGSSLSAPLS KSFNIGRAAQ NAAVFGFQQQ LYPPHHIMTD SSSSSLPKTF REGDLFKDPN  180
SLDQEPGSRS PKPGSEAPDQ DPGLTRSRTQ NMIPPMWAVA APTPASTNGG SAFWMLPVGG  240
GGPANVQDPS QHMWAFNPGH YPGRIGSVQL GSMLVGGQQL GLGVAENNNL GLFSGGGGGG  300
GRVGLGMSLE QKPQHQVSDH ATGDQNPTID GSP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00614PBMTransfer from AT1G35560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap473685
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0078870.0AC007887.9 Genomic sequence for Arabidopsis thaliana BAC F15O4 from chromosome I, complete sequence.
GenBankAY0564290.0AY056429.1 Arabidopsis thaliana At1g35560/F15O4_35 mRNA, complete cds.
GenBankAY0817140.0AY081714.1 Arabidopsis thaliana At1g35560/F15O4_35 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870514.10.0transcription factor TCP23
SwissprotQ9LQF00.0TCP23_ARATH; Transcription factor TCP23
TrEMBLD7KLV80.0D7KLV8_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__3639__AT1G35560.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.11e-159TCP family protein