PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 472101
Common NameARALYDRAFT_472101
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 384aa    MW: 44236.8 Da    PI: 6.735
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
472101genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.81.3e-23954146
            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
            kr e++snrqvt++kR++gilKKA+ELS+LCd+++ +++fs+tg+ 
  472101  9 KRLESTSNRQVTYTKRKTGILKKAKELSILCDIDIVLLMFSPTGRA 54
            689*****************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.455161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-30160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-26295IPR002100Transcription factor, MADS-box
CDDcd002663.48E-27282No hitNo description
PRINTSPR004043.3E-19323IPR002100Transcription factor, MADS-box
PfamPF003198.2E-201157IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGRVKLKIKR LESTSNRQVT YTKRKTGILK KAKELSILCD IDIVLLMFSP TGRATAFHGE  60
HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD VNIHDFLGAR NQTIEGLSNQ  120
VAIYQAQLME CHRRLSCWTN IDRIENTEHL NLLEESLRKS IERIQIHKEH YRKNQLLPIE  180
CATTQFHSGI QLPMAMGGNS SMQEAHSMSW LPDNDNQQTI LPGDSSFLPH REMDGSIPVY  240
SSCFFESTKP EDQICSNPGQ QFEHLEQQGN GCLGLQQLKE EYSYPTQFGT TLRMEDDQEK  300
KIKSEMELNN LQQQQQQQQQ DPSMYDPMAN NNGGCFQIPH DQSMFVNDHH HHHHHHHQNW  360
VPDSMFGQTS YNQVCVYTSI GTM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P8e-14192190Myocyte-specific enhancer factor 2B
1tqe_Q8e-14192190Myocyte-specific enhancer factor 2B
1tqe_R8e-14192190Myocyte-specific enhancer factor 2B
1tqe_S8e-14192190Myocyte-specific enhancer factor 2B
6c9l_A8e-14192190Myocyte-specific enhancer factor 2B
6c9l_B8e-14192190Myocyte-specific enhancer factor 2B
6c9l_C8e-14192190Myocyte-specific enhancer factor 2B
6c9l_D8e-14192190Myocyte-specific enhancer factor 2B
6c9l_E8e-14192190Myocyte-specific enhancer factor 2B
6c9l_F8e-14192190Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap472101
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1431720.0AY143172.1 Arabidopsis thaliana MADS-box protein AGL65 (AGL65) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890300.10.0agamous-like MADS-box protein AGL65 isoform X1
RefseqXP_020867389.10.0agamous-like MADS-box protein AGL65 isoform X1
SwissprotQ7X9I00.0AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLD7KH660.0D7KH66_ARALL; AGL102
STRINGfgenesh2_kg.1__2055__AT1G18750.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59332543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.10.0AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]