PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 322910
Common NameARALYDRAFT_322910
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 135aa    MW: 15514.1 Da    PI: 10.6288
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
322910genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26071.61.6e-225103199
  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
             +C  C++++++C++dC+++p fp+++ +kf +++ +FG ++++ +lk+l++ +r+ ++++l++eA+ +   P +    +++++ +  +q+ ael+++k+
  322910   5 PCRFCRLQNKQCVNDCMFSPLFPSNNLRKFTIMNFVFGHKTLTFFLKDLSPMDRKYTTRTLYFEAKSWFFGPSKDPSDFLNAVINYANQTLAELSKTKK 103
             7*********************************************************************************************99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.1074105IPR004883Lateral organ boundaries, LOB
PfamPF031954.4E-215102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MNPIPCRFCR LQNKQCVNDC MFSPLFPSNN LRKFTIMNFV FGHKTLTFFL KDLSPMDRKY  60
TTRTLYFEAK SWFFGPSKDP SDFLNAVINY ANQTLAELSK TKKLLASYSR PTVVLALPAP  120
RFLRSKTKSS DGHR*
Cis-element ? help Back to Top
SourceLink
PlantRegMap322910
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001326100.11e-54LOB domain-containing protein 26
RefseqNP_001326101.11e-54LOB domain-containing protein 26
RefseqNP_189433.11e-54LOB domain-containing protein 26
SwissprotQ9LIJ08e-56LBD26_ARATH; LOB domain-containing protein 26
TrEMBLD7LPM65e-94D7LPM6_ARALL; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_50004548e-95(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2101245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27940.13e-58LOB domain-containing protein 26