PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 313705
Common NameARALYDRAFT_313705
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 265aa    MW: 30641.6 Da    PI: 7.3463
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
313705genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.84.1e-08140184655
             HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
             +++ r+RR+ri ++ +eL +l+P +     +K + ae+   A +Y+k Lq
  313705 140 SIAARKRRRRITEKTQELAKLIPGS-----QKHNTAEMFHAAAKYVKFLQ 184
             6788*******************98.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-10132195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-10133198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.57134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5140184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-8140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MIIPENDTFF FQAQPQHQPL YHDEALSPSL FRFDHFDHFY DSFLPPQEIF LPIPKTQVFN  60
ESQDLDSFFH TPKHQNLINS SFHFNTHDPF SPRPNSNLCD SYITEAANIS EFRVPDFSST  120
FKVGWTEQGD TKKRELSAQS IAARKRRRRI TEKTQELAKL IPGSQKHNTA EMFHAAAKYV  180
KFLQAQTEIL QLKQSKIQTR DSSKVGREIQ FLLASQEIQE KLSTEEVCVV PREMVQVLKA  240
EECILRNPKL SRDINKLLST NLTN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131148KKRELSAQSIAARKRRRR
2143147RKRRR
3144149KRRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMap313705
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885870.0AF488587.1 Arabidopsis thaliana clone bHLH052 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893639.20.0transcription factor bHLH52
SwissprotQ9SA821e-163BH052_ARATH; Transcription factor bHLH52
TrEMBLD7KFM80.0D7KFM8_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh1_pm.C_scaffold_10024850.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-165bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]