PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.ZUP60
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 350aa    MW: 40504.1 Da    PI: 7.2432
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.ZUP60genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.82.1e-53101401128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  +ppGfrFhPtdeel+ +yLkkkv+ + ++l +vi+evd++k+ePwdL+ k ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++++
  Araip.ZUP60  10 VPPGFRFHPTDEELLYYYLKKKVSYEAIDL-DVIREVDLNKLEPWDLKdKcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHT 106
                  69****************************.9***************943444443456*************************************99 PP

          NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   +++ +g++ktLvfy grap+g+ktdW+mheyrl
  Araip.ZUP60 107 nNSKRIGMRKTLVFYIGRAPHGQKTDWIMHEYRL 140
                  67788***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-603160IPR003441NAC domain
PROSITE profilePS5100558.8110160IPR003441NAC domain
PfamPF023655.8E-2811140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MMAGSGQLTV PPGFRFHPTD EELLYYYLKK KVSYEAIDLD VIREVDLNKL EPWDLKDKCR  60
IGSGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIYHTNNSK RIGMRKTLVF  120
YIGRAPHGQK TDWIMHEYRL DEDDAEVQED GWVVCRVFKK KNQSRGFQQE IEEEEHHHLA  180
AEHQHMRGVA SQQVLDPKHH HHLQHHQGLY DNDNDNNYTN NFDGSMHLPQ LFSPESSVAT  240
AAAHTSMNAM DILECSQNLL RLTTTSGCGL NLMQQQHGER FNGDWSFLDK LLASHHGSTM  300
DHHHHHHHHS KCNNNLHHQH PAIAIGTTSS QKFPFHHLGC DNHDIMKFSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-54716514170NO APICAL MERISTEM PROTEIN
1ut4_B9e-54716514170NO APICAL MERISTEM PROTEIN
1ut7_A9e-54716514170NO APICAL MERISTEM PROTEIN
1ut7_B9e-54716514170NO APICAL MERISTEM PROTEIN
4dul_A9e-54716514170NAC domain-containing protein 19
4dul_B9e-54716514170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.ZUP60
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016169436.10.0protein SOMBRERO
RefseqXP_025673828.10.0protein SOMBRERO
SwissprotQ9MA171e-121SMB_ARATH; Protein SOMBRERO
TrEMBLA0A444Y1Y00.0A0A444Y1Y0_ARAHY; Uncharacterized protein
STRINGGLYMA08G17140.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72043447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-98NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]