PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.YB6JS
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 231aa    MW: 25346.2 Da    PI: 7.6934
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.YB6JSgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.56.2e-40171181101
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l ++
  Araip.YB6JS  17 PCGACKFLRRKCAADCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQV 114
                  7*************************99********************************************************************99 PP

       DUF260  98 keel 101
                  k++l
  Araip.YB6JS 115 KAQL 118
                  9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.05516118IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-3817115IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MACSSGNGTS SGGSGSPCGA CKFLRRKCAA DCIFAPYFCS EQGPARFAAI HKVFGASNVS  60
KLLLHIPAHD RCEAVVTIAY EAQARIRDPV YGCVSHIFAL QQQVACLQAQ LMQVKAQLAQ  120
NQMESCRNIE NQWPGNVGGA INNNNNNPFG HTNYMNPPIS PQSSLESIDH HSSSIIDGVA  180
NNNMHDTRPE DFNSFQQQQQ QASSKRRSYN NNNNNNDLGE LQELALRMMR N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1423648e-77BT142364.1 Medicago truncatula clone JCVI-FLMt-14N17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016204734.11e-173PREDICTED: LOB domain-containing protein 16-like
SwissprotQ9SLB74e-81LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A151TUN01e-108A0A151TUN0_CAJCA; LOB domain-containing protein 16
STRINGGLYMA03G31830.11e-102(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45093358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.15e-55lateral organ boundaries-domain 16