PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.Y5APX
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TCP
Protein Properties Length: 455aa    MW: 47139.8 Da    PI: 7.1375
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.Y5APXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.21e-4042155289
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 
                  ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s++          
  Araip.Y5APX  42 TAPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksaphtfh 139
                  5679*****************************************************************99988888888888555554444444444 PP

          TCP  89 ...............k 89 
                                 +
  Araip.Y5APX 140 aaalalahhhpsyeeA 155
                  4444333332232220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-3947172IPR005333Transcription factor, TCP
PROSITE profilePS5136928.49648102IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MGGSISSSSS SSSSSSNSTS SSTTIDANLA IATRSDDNQL QTAPKRSTKD RHTKVDGRGR  60
RIRMPATCAA RVFQLTRELG HKSDGETIEW LLQQAEPAII AATGTGTIPA NFSTLNVSLR  120
SSGSTLSAPP SKSAPHTFHA AALALAHHHP SYEEAFHPHT ALLGFHPHHA QHQHLMTADQ  180
IAEALPGGAA DSSENYMRKR FREDLFKDES NHQSESQNNE SGGTGAVAAD GSSPKPFKTN  240
LQMQLQQQQP QPEGGGAGGG GGSSGHGLLR QSNLVPATAM WAVAPAPATA GAPGSTIWML  300
PVTAGGAGGV ATGAAASEAQ MWPFAHQGGS GGGGGGGNNT LQGPLHLMPR FNLSPSGGVE  360
FQQEGRGGLQ LGSMVMPAAQ QQQQPPSQHL GLTMSESNLG MLAALNAYTR AGLNMNMNMN  420
INSSSSHHHH HHHHQPPPPP PQAADSGEDG PNSSQ
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.Y5APX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016197271.10.0transcription factor TCP8
RefseqXP_016197274.10.0transcription factor TCP8
RefseqXP_025645646.10.0transcription factor TCP8
SwissprotQ9C5184e-75TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A444ZC140.0A0A444ZC14_ARAHY; Uncharacterized protein
STRINGEOX971601e-144(Theobroma cacao)
STRINGGLYMA16G00580.11e-146(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.13e-57TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]