PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.XT8EM
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 289aa    MW: 32424 Da    PI: 7.0267
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.XT8EMgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94e-19103153656
                  S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  ++  eq+++Le+ Fe  ++++ e++ +LAk lgL+ rq+ +WFqNrRa++k
  Araip.XT8EM 103 RLGMEQVKALEKSFEAGNKLDPERKMQLAKALGLQPRQIAIWFQNRRARWK 153
                  56789*********************************************9 PP

2HD-ZIP_I/II130.95.1e-4299191193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekk+rl  eqvk+LE+sFe+ +kL+perK++la++Lglqprq+a+WFqnrRAR+ktkqlEk+ye+Lk+++da+k++n++L++++++L++el++
  Araip.XT8EM  99 EKKKRLGMEQVKALEKSFEAGNKLDPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFDAVKADNDSLKTQNQKLHAELEA 191
                  69***************************************************************************************9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.54E-1992157IPR009057Homeodomain-like
PROSITE profilePS5007116.95795155IPR001356Homeobox domain
SMARTSM003892.5E-1998159IPR001356Homeobox domain
CDDcd000862.90E-17100156No hitNo description
PfamPF000462.3E-16102153IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-20107154IPR009057Homeodomain-like
PRINTSPR000311.0E-5126135IPR000047Helix-turn-helix motif
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
PRINTSPR000311.0E-5135151IPR000047Helix-turn-helix motif
PfamPF021833.2E-15155194IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MAFPPSHSFI FHHDHQQPQH HPLRTTPPSA PAFPSFPPHH HHFPAGGGGG SGGGSWMKRS  60
MSFSGIDTTK NCGGGAGADE LALLHGDDEL SDDGSQIGEK KKRLGMEQVK ALEKSFEAGN  120
KLDPERKMQL AKALGLQPRQ IAIWFQNRRA RWKTKQLEKE YEVLKKQFDA VKADNDSLKT  180
QNQKLHAELE ALKGSREWCE NGTMITLKKE NEGSWSNNGS DNSSDMNLDL SRTPVMNSPP  240
ASITQLLQCS SSSRSDLQDE GFCNMFHNID EQHQNFWPWP TTENHHHFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147155RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.XT8EM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025683322.10.0homeobox-leucine zipper protein HAT7 isoform X1
SwissprotQ004662e-75HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A444X8180.0A0A444X818_ARAHY; Uncharacterized protein
STRINGXP_007151217.11e-118(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127133106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.14e-59homeobox 3